Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00024 ATGCGACTGGGGAAGTATGAGATTGGGAAAACTCTTGGGCATGGCAATTTCGGGAAGGTCAAATATGCTATTAATTTTGAAACTCAACAACCTTTTGCTGTCAAAGAACTTGATAAGACTAAGATTATCGATCTTAATATCACTCATCAGTTTAAAAGGGAAATTTACACACTCAAACTTCTCAAGCATCCAAACATAGTGAGGCTACATGAGGTATTAGCTAGTAAAAGCAAAATTTACATGGTCCTTGAGTACGTCAATGGCGGAGAATTGTTTGATACAATTTCATCTAAGGGAAGGTTATCAGAAGCTCAAGGCAGAAAAATCTTCCAACAATTACTTGACGGTGTGAGTTATTGCCACCGTAAAGGCGTTTACCACAGAGATATTAAGCTGGAGAACATACTAATTGATGCGAATGGAAACGTTAAGATAACTGACTTTGGCTTAAGTGCTTTACCTGACCATTTTAGGGGTGATGGTTTGCTTCACACAACATGTGGAAGCCCAAACTATGTGGCACCAGAGATTCTTGCTAATAGAGGATATGATGGTGCAGCCTCAGATATATGGTCTTGTGGTGTCATCTTGTTTGTTATTCTCACTGGATCTCTTCCTTTTGATGATAGAAATTTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATCCATCTACCAAAGTGGCTATCACAAGGAGCCAAAAATTTGATAAGAAGGATTCTTGATCCTAACCCTAAGTCTAGAATAACAATGGCATCTATCAAAATGGATGATTGGTTTAGAAAGGATTATCGTCCAGCCTATCTTGATGATGAAGAAGAAGATACACACACTAACGAAGCTATATCCTTCTCAATGCATCAAGTGCCATCTTATCTCGAGGGAAAGTGTTCAGAATCTCCCACAACTATAAATGCTTTTCAACTCATTGGAATGTCTTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGAAAGGTTAGATTTACCACCATTCACTCTACAAAAGAAGATATCCTCAAGCGGATGGAGGATGTTGTAACTGATATGGGGTTTCTTGTCCAGAAGAAAGACAGAAGGTTGAAAGTAAAGAGAGAGGAAAAGGATGAGAATGGTATGGCCACCATACTTTCAATATTAGCAGAGGTTTTTGAGATAAGTCCGTCATTATACGGTGTAGAATTAAGAAAGTTGCGTGGAGATTTATCTTCGTATCGACAGTTGTGTAAAATATTATCTAGTGATTTGGGTATCCCCTCCAGCCAAGACTCTCGATGA 1296 38.43 MRLGKYEIGKTLGHGNFGKVKYAINFETQQPFAVKELDKTKIIDLNITHQFKREIYTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGGELFDTISSKGRLSEAQGRKIFQQLLDGVSYCHRKGVYHRDIKLENILIDANGNVKITDFGLSALPDHFRGDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIHLPKWLSQGAKNLIRRILDPNPKSRITMASIKMDDWFRKDYRPAYLDDEEEDTHTNEAISFSMHQVPSYLEGKCSESPTTINAFQLIGMSSCLDLSGFFEKEDISERKVRFTTIHSTKEDILKRMEDVVTDMGFLVQKKDRRLKVKREEKDENGMATILSILAEVFEISPSLYGVELRKLRGDLSSYRQLCKILSSDLGIPSSQDSR* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 162738 169547 - CsaV3_6G000240.1 Csa06g00024 531651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00024 431 Gene3D Kinase associated domain 1, KA1 299 424 - -
Csa06g00024 431 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Csa06g00024 431 Gene3D Transferase(Phosphotransferase) domain 1 86 288 - -
Csa06g00024 431 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00024 431 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Csa06g00024 431 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00024 431 PANTHER SERINE/THREONINE KINASE 3 430 - -
Csa06g00024 431 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 3 430 - -
Csa06g00024 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Csa06g00024 431 SUPERFAMILY Protein kinase-like (PK-like) 3 293 IPR011009 -
Csa06g00024 431 CDD CIPK_C 306 422 - -
Csa06g00024 431 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Csa06g00024 431 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00024 431 Pfam NAF domain 302 362 IPR004041 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01559 Csa-Chr3:11613345 Csa06g00024 Csa-Chr6:162738 0 dispersed
Csa06g00024 Csa-Chr6:162738 Csa03g00767 Csa-Chr3:6741087 3.54E-153 dispersed
Csa06g00023 Csa-Chr6:151726 Csa06g00024 Csa-Chr6:162738 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78305 PF00069 Pkinase 7.80E-74 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00024 K07198 - csv:101206030 833.943