Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00029 ATGTGGGAGCCCTCCTTGGTGGCGTGGTCATTTTTCATTCTTACATTGTTGTTCACTACTTTTCTTCCAAACATATTAAAAAAGAAAAAGTACAATGATCAAAATGATCAAAATGATCAAAGTCGAACAAGATACAAATTTCCTTCCGGGAGAAGAAGTTGGCCTGTTATAGGTGATAGCTTCAACTGGTACTCTGCCATTGCAAGTTCGCATCCTTCCAAGTACGTTGAAGAACAAGCCAAAAGATACGGGAAGATCTTCTCGTGTCGTGTTTTTGGCAAATGTACAGTGGTATCGGTCGATCCAGATTTTAATAGGTATGTGATGCAAAACGAAGGGATATTGTTTCAATCGAGCTATCCCAAGTCTTTTAGAGATTTAGTAGGCGTAAACGGTGTTATCACGGCTCAAGGAGAACAACAGAGGAAACTCCATGGAATTGCTTCCAATTTTATGCGTATAAACAAACTCAACTTTAGCTTCATAAAAGAAATTCAAACCATAATCATCCATTCCTTGACCACTTTCCATGACCGTCATCAAATCATCTCTCTCCAAGATGCTTGCAGGAAGATTGCCATTAATCTTATGGTAAGTCAGCTACTGGGTGTGTCAAGTGATTCGGAAGTGAACGAGATCAGTGGTTTATTTTACGACTTTGTAGATGGTTGTCTTTCTTTCCCTATCAATTTACCTCCCTTTGCCTATCACTCTGCCATGAAGGCAAGGAAGCAAATCATAAGAAAAATAAAGAAGAAAATAGAGATGCAGAAATCAATGGAAAAGAGTAGTAGTAGTGGGCATGGAGTTCTTGGAAGACTATTAGAGGAACAAAAGCACTTATGTGATGAGGCAGTTGAAGATTTCATAATCAATCTTCTTTTTGCCGGCAATGAAACCACTTCTAAGACAATGCTTTTCGCAGTCTATTACCTAACCCACTCACCTAAAGCATTTGAGCAACTCATGGAAGAACAAGATGGTTTGAGAAATAAGTGTGGAGACAATACAGTCACATGGGAGGATTATAAATCAATGTCATTTACCCAATGTGTTATTGATGAGACACTTCGACTCGGAGGAATTGCAATTTGGTTGATGAGAGAGACAAAAGAAGAGATTAAATACTCAGATTATGTGATTCCAAAGGGAACTTTTGTTGTTCCATTTCTTTCTGCTGTACATTTGGATGAGAATATTTATGATGAAGCTTTAACCTTTAATCCTTGGAGATGGATGCAGCTTCAAAATCAGGAAAAGAGAAATTGGAAAAGTAGCCCATATTTTGCACCATTTGGAGGAGGGGGTAGATTGTGCCCGGGAGCTGAATTGGCTCGTCTTCAAATTGCTCTATTTCTCCATCACTTTCTTACCAACTATAGGTGGACACAAATTAAAGAAGATAGAATGTCTTTCTTTCCCTCGGCTCGACTAGTTAATGGCTTTCAAATTCGCTTGGAAAGACGGGAACACTGA 1476 38.89 MWEPSLVAWSFFILTLLFTTFLPNILKKKKYNDQNDQNDQSRTRYKFPSGRRSWPVIGDSFNWYSAIASSHPSKYVEEQAKRYGKIFSCRVFGKCTVVSVDPDFNRYVMQNEGILFQSSYPKSFRDLVGVNGVITAQGEQQRKLHGIASNFMRINKLNFSFIKEIQTIIIHSLTTFHDRHQIISLQDACRKIAINLMVSQLLGVSSDSEVNEISGLFYDFVDGCLSFPINLPPFAYHSAMKARKQIIRKIKKKIEMQKSMEKSSSSGHGVLGRLLEEQKHLCDEAVEDFIINLLFAGNETTSKTMLFAVYYLTHSPKAFEQLMEEQDGLRNKCGDNTVTWEDYKSMSFTQCVIDETLRLGGIAIWLMRETKEEIKYSDYVIPKGTFVVPFLSAVHLDENIYDEALTFNPWRWMQLQNQEKRNWKSSPYFAPFGGGGRLCPGAELARLQIALFLHHFLTNYRWTQIKEDRMSFFPSARLVNGFQIRLERREH* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 208797 215212 - CsaV3_6G000290.1 Csa06g00029 531656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00029 491 PRINTS E-class P450 group IV signature 74 97 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PRINTS E-class P450 group IV signature 287 313 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PRINTS E-class P450 group IV signature 346 362 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PRINTS E-class P450 group IV signature 379 393 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PRINTS E-class P450 group IV signature 395 413 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PRINTS E-class P450 group IV signature 423 439 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PRINTS E-class P450 group IV signature 439 457 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PANTHER CYTOCHROME P450 SUPERFAMILY PROTEIN 33 487 - -
Csa06g00029 491 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Csa06g00029 491 Gene3D Cytochrome P450 36 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PRINTS P450 superfamily signature 439 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 PANTHER CYTOCHROME P450 26 33 487 - -
Csa06g00029 491 SUPERFAMILY Cytochrome P450 42 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00029 491 Pfam Cytochrome P450 48 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00029 Csa-Chr6:208797 Csa07g02396 Csa-Chr7:22043310 3.35E-87 dispersed
Csa06g00029 Csa-Chr6:208797 Csa03g04086 Csa-Chr3:35819170 1.97E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00029 - - csv:101205087 946.806