Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00046 ATGGATCGAAGGGATCCGATGGCGTTATCGGGGTCGCAATCGTTTTATATGCAGAGGGGAATTAGCAACTCTGGGTCTGGAGCACAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAAACCAACACTGGAGGGAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACTCTGGTATTTCACCTTATGGTGGCAATGTAGGCGCTCAATCTGGTGGAGTGGTTGCCAGCGAGCCCGTGAAACGCAAGCGAGGCCGCCCACGCAAGTATGGAACTGAAGGGACTGTCTCTTTGGCACTCTCTCCCTCCCCTTCTGCTGTAAATCCAGCCACTGTAGCTTCTTCCCCAAAGCGTGGAAGGGGACGGCCTCCCGGCTCTGGAAAGAAGCAACAATTGGCTTCTCTTTGTGAAACACTTTCTGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGCTGCCAAGATCATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTTTCCACTGTTACTCTTCGTCAGCCTTCAACTTCAGGAGGCACAGTTACATATGAGGGGCGTTTTGAGATAATATGTCTGTCGGGCTCTTATGCTCTTGGTGAAATTGCTGGTTCTAGGAACCGCACTGGTGGTCTTAGTGTCTCCCTTGCTAGCCCTGATGGGCGTGTTATTGGCGGTGGGGTAGGAGGAGCACTTGTTGCAGCAACCCCAGTTCAGGTGATAGTAGGAAGCTTCATGTGGGGTAGTTCGAAATCAAAGTACAAGAAGAGGGAAGCTATTGAAGGTGTGATTGACTCGGATCATCAGTCTGTAGATCATGCAGTTGCAATCGCGAGTGTGCAGCAGAATCAGAATCTGACTCCAACATCCTCAGTTAGTATGTGGCCATCCTCACAGTCTCTGGATATGCGTAATGCTCACATTGACATTGATCTGATGCGCGGTTGA 1005 49.65 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNSGISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKRGRGRPPGSGKKQQLASLCETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEIAGSRNRTGGLSVSLASPDGRVIGGGVGGALVAATPVQVIVGSFMWGSSKSKYKKREAIEGVIDSDHQSVDHAVAIASVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 313734 319074 - CsaV3_6G000460.1 Csa06g00046 531673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00046 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Csa06g00046 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Csa06g00046 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 325 IPR039605 GO:0003680
Csa06g00046 334 MobiDBLite consensus disorder prediction 11 56 - -
Csa06g00046 334 Gene3D - 151 284 - -
Csa06g00046 334 CDD DUF296 150 239 IPR005175 -
Csa06g00046 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Csa06g00046 334 MobiDBLite consensus disorder prediction 98 114 - -
Csa06g00046 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Csa06g00046 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Csa06g00046 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677
Csa06g00046 334 MobiDBLite consensus disorder prediction 1 134 - -
Csa06g00046 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
Csa06g00046 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00180 Csa-Chr3:1332208 Csa06g00046 Csa-Chr6:313734 5.12E-56 dispersed
Csa06g00046 Csa-Chr6:313734 Csa06g02206 Csa-Chr6:19888856 4.74E-69 dispersed
Csa05g00288 Csa-Chr5:1809144 Csa06g00046 Csa-Chr6:313734 1.88E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00046 - - csv:101203138 637.106