Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00058 ATGGCTGGTAGTAGTGGAGAAGATTTGGTTTATGTGGCTGTGGGAAATGATATAAACGAGTGTAAATTGAATTTGGTTTATGCTATAAAGCACTCGGGTGGGAGGAGGATTTGCATCCTTCATGTTCATGAACCAGCAAAGTTCATTCCAATCTTGGGAACAAAATTTTTGGCAAGTTCAATGAAAGAAGAGGAAGTAAATGCATATCGCGAACTTGAGAGGCAGGATGCTGATAAGATTCTCGATGTATTTCTTCTCCTCTGTCACCAAGCTGGGGCTCGGGCAGAGAAACTTTATTTTGAATCCGACAAAATTAAGAAGGGAATTGTCGAACTTGTCTCGCTTCATGGAATTAGAAGCCTTGTTATGGGTGCAGCAGCAGATAAGTATTACTCAAGAAAAATGACAAAAATCAGATCGAGGAAAGCTATGTATGTTCACCTGAATGCAGCAGCTTCCTGTCAAATTCAGTTTGTTTGCAAAGGGCAGTTAATTCGCATTAGGGAAGCTTGTCCACAGGAAACTCATGCAGATATCTCACCATCATCACCTCAGTCACAGAACATCAATGGGGTAAGTTGGAGAACAGAGCAGTTTGGCCTATTTAATGGGAGAATAAGCAACAGTCCAACAATTGTTATGGAAAGGCTTACGATTTCAGAGACCATTTCAAATGCTAGTGGGAGCCCTTTTGAACGTTCATATGCAACAAGTCCTTCTAGTGGATATATGGATGTTGCATCTTCCAGGACTGAGGAAGATGCCTATGGACTAGGATTAAATTCTCCTCTTCTGTTGACAAATTTTGCTACCAAAACTTCTCCTCCTCATTTTTCGGGATTCCAGCAAGATGGAAGTGCTGATGATAGTCTTTATATTCAACTTGAAAAGGCGATAGCTGATGCAGCAAACGCCAGGCGAGAAGCCTTTAGAGAGGCATTGAAGCGAGCAAAAGCTGAAAAAGAACTTGACGAAGCTATTTGCTGGGCTAAAGTTTCTGAAACCTTGTATGCTGAAGAGTCAAGAGGAAGGAAAGACGCTGAAGAAGAGCTGTCAAAAGAAAGAGAAGAACTTGACGATGTGAAAAACCAAGTAAATGAAATGATGAAGGAGCTCCAAATTGCCCGAAATAACGGATTAAAATTAGAGAACCAAATTGCACAATCTGATGAGATGGTGAAGGAGTTGGAGCAGAAGATCCTCTCAGCCATAGAACTGCTGCATAATTACAAAAATGATCGAGATGAATTGCTGAAGCAACGAGATGAAGCACTCAAAGAATTGGATGACATAAGGACAAGACAAGTAGAGGCCATGTCTCAACATAGTGCTCAACTAATCTCCGAATTCTCATTCTCAGAAATTGTAGAAGCGACCCGGAAATTTGATCCCTCCCTCAAGATTGTAACGGATGCAAATGGAAGCATGTATAAAGGCCTGCTGTATAACACTGAGGTTTCCATAAAAATGCTCTGTTCTCATAACTTGCAGAATCCAGTAGACTTTCAACGTGAGGTCGATGCATTGAGTAAGCTTAGGCATCCCAATATTGCCACGCTCATTGGAGTCTGTCCCGAGGCTTGTATTCTTGTTTATGACTATTTTCCGAATGGAAATTTAGAAGATAGGCTAGCTTGCAAGGACAATTCTTCTCCGTTATCATGGAAAACTCGGATACTTATTGCTACACAGTTATGCTCAGCTCTTATATTTATTCATTCGAATAAAATTTGCAAGACCGTTCATGGTGACATGAAGCCTTCCAATATACTATTGGATGCAAACTATGTTCCTAAACTTGCAGGATTTGGAACTTGTCATTTTTTGACTCATGATGAAAAGTTGAGTTACAATGAGAATTTATCTGTCGGATATGATGCGAAGAGGAATCATGAATTCCCTCTCACAACAGAGTTGGACATTTATTCATTTGGCACGGTATTACTAAGTTTGTTAACTGGAAAATCATACTTGAGGATGAAAGAAGATGTCCAGATCGCCATAAAGAAACGAAAATTGAAAGATGTATTGGATCCACGAGCAGGGGACTGGCCGTTCGTGCAGGCTGAACAGTTAGCCCAGTTGGCATTGAGGTGTTGTGATACAGATAGTATGTACAGGCCAGACCTTGTGTCTGATGTGTGGAGAGTACTTGAGCCAATGAGGGCTTCTTGTGGAGGTTCACTATCAGTATGCCTAAGCTTTGGGGACCAGCAAGTGCAACCTCCTCCTTATTTCATATGTCCTATTTTTCAGGAAGTCATGGAGGATCCTCATGTTGCAGCGGACGGGTTTACCTACGAGGCAGAGGCTTTGAGAGGATGGTTGGACAGTGGGCACGACACTTCACCGATGACAAACCTAAGGCTCGATCACCAAAACCTCGTCCCTAACCGTGCTCTTCGTTCTGTAATTCAAGAATGGTTGCAACAGCACCAGTAA 2442 41.81 MAGSSGEDLVYVAVGNDINECKLNLVYAIKHSGGRRICILHVHEPAKFIPILGTKFLASSMKEEEVNAYRELERQDADKILDVFLLLCHQAGARAEKLYFESDKIKKGIVELVSLHGIRSLVMGAAADKYYSRKMTKIRSRKAMYVHLNAAASCQIQFVCKGQLIRIREACPQETHADISPSSPQSQNINGVSWRTEQFGLFNGRISNSPTIVMERLTISETISNASGSPFERSYATSPSSGYMDVASSRTEEDAYGLGLNSPLLLTNFATKTSPPHFSGFQQDGSADDSLYIQLEKAIADAANARREAFREALKRAKAEKELDEAICWAKVSETLYAEESRGRKDAEEELSKEREELDDVKNQVNEMMKELQIARNNGLKLENQIAQSDEMVKELEQKILSAIELLHNYKNDRDELLKQRDEALKELDDIRTRQVEAMSQHSAQLISEFSFSEIVEATRKFDPSLKIVTDANGSMYKGLLYNTEVSIKMLCSHNLQNPVDFQREVDALSKLRHPNIATLIGVCPEACILVYDYFPNGNLEDRLACKDNSSPLSWKTRILIATQLCSALIFIHSNKICKTVHGDMKPSNILLDANYVPKLAGFGTCHFLTHDEKLSYNENLSVGYDAKRNHEFPLTTELDIYSFGTVLLSLLTGKSYLRMKEDVQIAIKKRKLKDVLDPRAGDWPFVQAEQLAQLALRCCDTDSMYRPDLVSDVWRVLEPMRASCGGSLSVCLSFGDQQVQPPPYFICPIFQEVMEDPHVAADGFTYEAEALRGWLDSGHDTSPMTNLRLDHQNLVPNRALRSVIQEWLQQHQ* 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 375570 382507 + CsaV3_6G000580.1 Csa06g00058 531685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00058 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 740 813 IPR013083 -
Csa06g00058 813 SMART Ubox_2 745 808 IPR003613 GO:0004842|GO:0016567
Csa06g00058 813 CDD STK_N 9 162 - -
Csa06g00058 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 8 808 - -
Csa06g00058 813 CDD RING-Ubox_WDSUB1_like 746 787 - -
Csa06g00058 813 SUPERFAMILY Protein kinase-like (PK-like) 444 716 IPR011009 -
Csa06g00058 813 SUPERFAMILY RING/U-box 737 812 - -
Csa06g00058 813 Gene3D Transferase(Phosphotransferase) domain 1 536 720 - -
Csa06g00058 813 ProSiteProfiles Protein kinase domain profile. 441 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00058 813 Coils Coil 337 434 - -
Csa06g00058 813 Gene3D Phosphorylase Kinase; domain 1 432 534 - -
Csa06g00058 813 Pfam U-box domain 743 813 IPR003613 GO:0004842|GO:0016567
Csa06g00058 813 Pfam Protein kinase domain 474 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00058 813 SMART serkin_6 462 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00058 813 Coils Coil 292 320 - -
Csa06g00058 813 ProSiteProfiles U-box domain profile. 741 813 IPR003613 GO:0004842|GO:0016567
Csa06g00058 813 PANTHER OS02G0152300 PROTEIN 8 808 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00887 Csa06g00058 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01725 Csa-Chr3:12921325 Csa06g00058 Csa-Chr6:375570 1.54E-171 dispersed
Csa06g00058 Csa-Chr6:375570 Csa06g01490 Csa-Chr6:12600999 1.13E-128 dispersed
Csa06g03109 Csa-Chr6:26600834 Csa06g00058 Csa-Chr6:375570 1.95E-82 dispersed
Csa03g00887 Csa-Chr3:7385538 Csa06g00058 Csa-Chr6:375570 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78306 PF00069 Pkinase 1.20E-27 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00058 - - csv:101202751 1607.04