Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00061 ATGGACGTGGGATTCGCTTTAGTTATAGTAACAGCAGTAACGGCGTATCTTCTTTGGTTTACTTTCATTTCACGGTCGTTAAAAGGCCCTCAAATGTGGCCGTTGCTCGGCAGCCTCCCTGGGTTAATCGAAAATTGCGACCGGTTGCATGATTGGATCTCCGATAACCTCCGCGCCTGTGGCGGCACCTACCAAACCTGCATCTGGGCTTTCCCTTTCTTCGCTAAAAAGCAAGGCCTCGTTACTGTCACGTGTGACCCGAGAAATCTCGAACATATTCTCAAGACCCGATTCGATAATTACCCCAAAGGCCCCACCTGGCAAGCTGTTTTTCACGAGTTGCTTGGTCAAGGCATTTTTAACTCCGACGGTGATACCTGGCTTTTCCAAAGAAAAACTGCTGCTTTGGAATTTACTACCAGGACTCTTCGTCAAGCCATGGCTCGTTGGGTTAGCCGCGCTATTAAGTTGCGATTTTGCCCTATTCTCAAAGAAGCTGAGTTGAATTCTCACCCCATTGATCTTCAAGATGTACTATTACGTCTTACTTTTGATAATATTTGTGGTTTGGCTTTTGGAAAAGATCCAATGACTTGTGCCCCCGGTTTCCCCGAAAATGGCTTTGCTATGGCTTTCGATCGAGCCACGGAAGCTTCGTTGCAACGGTTTATTCTACCGGAAGTGCTTTGGAAATTCAAAAAGTGGCTTCGGCTAGGGATGGAAGTCAGCTTGAGCCGGAGTTTAGTTCATATTGAGGAGTATTTATCTAGTGTGATTGATTCACGTAAGCTGGAGTTGCTGAATCAGCCTAAGGACTCCACACCACACGATGATTTACTCTCACGGTTCATGAAGAAAAAGGATGGTAATTACTCCAACGCGTTTCTTCGCCATGTGGCGCTTAATTTCATCCTAGCTGGACGTGACACGTCATCCGTAGCGCTGAGCTGGTTTTTCTGGTTGGTAACATTAAACCCACTCATTGAAGAAAAAATCCTCCGTGAGATCTGCACGGTTCTCATCGAGACACGTGGAAACAACATCCAATCATGGCTCGATGAACCTTTAGAATTCGAAGAGATCGACCGTCTGATTTATCTCAAAGCCGCTCTCACCGAAACCCTAAGACTCTACCCGTCGGTACCAGAAGATTCCAAACACGTCGTCGCCGACGACATTCTGCCGGACGGAACCTTCGTTCCGGCGGGATCATCGGTAACGTATTCAATCTATTCCACCGGAAGAATGAAGTCGACATGGGGAGAAGACTGCCTCGAATTCCGTCCTGAGCGATGGTTAACAGCGGATGGAACGAAATTCATAGCGTATGATCCGTACAAATTCGTATCGTTCAATGCAGGGCCAAGAATCTGCCTAGGGAAGGACTTAGCGTATTTACAAATGAAGTCGATAGCAGCAGCTGTGCTACTCCGGCACCGGCTGACAGTAGCGGCGGGGCACAAAGTGGAACAAAAAATGTCATTGACGCTGTTTATGAAGTACGGACTGAAGGTGAACATTCACAAGAGGAATTTGGAGGGAATTGTGGAGAGTATGAGGGGCAAATACGGGAATTCGCAAGGGAAAGATAGTCCGTTAATCACGGTTGTGAATTGTAACGGAGGATGTAACGGAATGAAGTAG 1644 47.08 MDVGFALVIVTAVTAYLLWFTFISRSLKGPQMWPLLGSLPGLIENCDRLHDWISDNLRACGGTYQTCIWAFPFFAKKQGLVTVTCDPRNLEHILKTRFDNYPKGPTWQAVFHELLGQGIFNSDGDTWLFQRKTAALEFTTRTLRQAMARWVSRAIKLRFCPILKEAELNSHPIDLQDVLLRLTFDNICGLAFGKDPMTCAPGFPENGFAMAFDRATEASLQRFILPEVLWKFKKWLRLGMEVSLSRSLVHIEEYLSSVIDSRKLELLNQPKDSTPHDDLLSRFMKKKDGNYSNAFLRHVALNFILAGRDTSSVALSWFFWLVTLNPLIEEKILREICTVLIETRGNNIQSWLDEPLEFEEIDRLIYLKAALTETLRLYPSVPEDSKHVVADDILPDGTFVPAGSSVTYSIYSTGRMKSTWGEDCLEFRPERWLTADGTKFIAYDPYKFVSFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVAAGHKVEQKMSLTLFMKYGLKVNIHKRNLEGIVESMRGKYGNSQGKDSPLITVVNCNGGCNGMK* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 403217 405876 - CsaV3_6G000610.1 Csa06g00061 531688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00061 547 PANTHER CYTOCHROME P450 7 523 - -
Csa06g00061 547 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 SUPERFAMILY Cytochrome P450 21 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 PANTHER CYTOCHROME P450 86A2 7 523 - -
Csa06g00061 547 Pfam Cytochrome P450 28 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 Gene3D Cytochrome P450 24 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00061 547 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02870 Csa-Chr3:27472038 Csa06g00061 Csa-Chr6:403217 2.67E-118 dispersed
Csa06g00061 Csa-Chr6:403217 Csa07g01975 Csa-Chr7:19392733 1.42E-150 dispersed
Csa01g02499 Csa-Chr1:22072491 Csa06g00061 Csa-Chr6:403217 0 transposed
Csa05g00271 Csa-Chr5:1665164 Csa06g00061 Csa-Chr6:403217 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00061 K15398 - csv:101221526 1120.53