Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00073 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCCTGCTTTCTTCTTCTTCTTCTTCTTTTCCTCTTTATCTCTCTCCCATCTCTCACTCTCTCTGTCTCCCAAGCCGAAGTTTCATATATTACTCAACGTCAACTATTGACTCTAAAAGAACACGATCAACTCCCCGATGACTTCAAATATGAACTTGACATTCCTGACACTTTTCCAAATGAGAGGTTGAAGAAAGCTTATGTAGCTCTTCAAGCGTGGAAATTAGCTGTTTATTCCGACCCAAAAAACATGACCGTCAATTGGGTTGGCGCCAATGTTTGTTCTTACAACGGTGTCTTCTGTGCTCCAGCGCTTGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAATGACGGTGACATTGCAGGGTACTTGCCTCCGGAACTCGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTTTGTGGGATCATTCCTTCTAGTTTCTCAAAGCTTGTACTTATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGTCACTTTCCACTTGTTGTCCTCGAATGGTCGAGTGCGAAGTACCTCGATCTCAGGTACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAACGAGTTTGACGCCATCTTCTTGAACAACAATAGATTCAATTCTTTAATTCCTGAAACCATTGGAAACTCCACCGTCTCTGTTGTCTCCTTCGCCAACAACGAATTCCATGGCTGCATTCCTAGCACCATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCATCGGTAACAAGCTCAGTGGTTGTTTTCCACCTGAGATCGGAAACCTCGTCAATCTCACAGTCTTTGATGTTAGCAACAATGGCTTCATAGGCCAATTGCCAGAATCATTGTCTGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAACGAACTGAGGGGCTCTGTCTCTGGTGATCTTTGCAAGTTGCCTAAATTGGCTAACTTCACTTTCTCCTTTAATTACTTTGATGGAGAAGATGCGGCATGTGCTACATCTAAAGGATCAGAGAAGCTCTTTGACGATAGTCAAAATTGTTTGGCAAATCGACCTATGCAGAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGACTGTGGAAATTGTGGTGGTGGGTCGAGTTCTCCTGGTGTGCCGTCGACCTTTGAGGATCCATACGATCAGTCTCCATCGCCAAGATATAGGTCTCCACCACCTCCAGTTGTGACTCCACCATCTCCAAGTGAGACCTCTGTTCCATCGTCGCCATCTATCACTGAAACACCTACTTCATCTCCAGCTGAATCTCCCCTACCACCAGTCTATTCCCCTCCTCCACCACCGGTTCATTCCCCACCACCCCCGTCCACTCTCCTCCACCCCCTGTTCATTCACCACCACCCCCGATCTCCTCACCTCCACCTCCTGTTCACTCACCACCACCACCAGTTCACTCTCCACCTCCACCGATTTACTCCCCACCACCCCCTGTCTACTCTCCACCACCTCCTGTCCACTCCCCACCACCACCGGTTCACTCTCCACCACCCCCCGTCCACTCTCCACCACCCCCTGTCTACTCTCCACCACCACCAGTCTATTCTCCACCACCACCTGTCTACTCTCCTCCACCTCCACCTGTTTACTCCCCACCGCCACCAGTTCAATCTCCACCACCTCCGATTGCATCTCCTCCTCCTCCCGATTCTTCACCACCACCGTCATTTGAAGATGTGA 1800 47.89 MASLHRKQANHACFLLLLLLFLFISLPSLTLSVSQAEVSYITQRQLLTLKEHDQLPDDFKYELDIPDTFPNERLKKAYVALQAWKLAVYSDPKNMTVNWVGANVCSYNGVFCAPALDDPKIEVVAGIDLNDGDIAGYLPPELGLLTDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPLVVLEWSSAKYLDLRYNDFEGEIPSTLFTNEFDAIFLNNNRFNSLIPETIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLSGCFPPEIGNLVNLTVFDVSNNGFIGQLPESLSGLQNLEIMDVSNNELRGSVSGDLCKLPKLANFTFSFNYFDGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGNCGGGSSSPGVPSTFEDPYDQSPSPRYRSPPPPVVTPPSPSETSVPSSPSITETPTSSPAESPLPPVYSPPPPPVHSPPPPSTLLHPLFIHHHPRSPHLHLLFTHHHHQFTLHLHRFTPHHPLSTLHHLLSTPHHHRFTLHHPPSTLHHPLSTLHHHQSILHHHLSTLLHLHLFTPHRHQFNLHHLRLHLLLLPILHHHRHLKM* 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 473104 475199 - CsaV3_6G000730.1 Csa06g00073 531700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00073 599 Gene3D Ribonuclease Inhibitor 78 237 IPR032675 -
Csa06g00073 599 Gene3D Ribonuclease Inhibitor 238 361 IPR032675 -
Csa06g00073 599 SUPERFAMILY L domain-like 87 353 - -
Csa06g00073 599 MobiDBLite consensus disorder prediction 454 475 - -
Csa06g00073 599 MobiDBLite consensus disorder prediction 419 439 - -
Csa06g00073 599 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 13 405 - -
Csa06g00073 599 MobiDBLite consensus disorder prediction 398 415 - -
Csa06g00073 599 MobiDBLite consensus disorder prediction 398 475 - -
Csa06g00073 599 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00073 Csa-Chr6:473104 Csa06g00076 Csa-Chr6:488593 0 dispersed
Csa06g00073 Csa-Chr6:473104 Csa06g00078 Csa-Chr6:493983 6.98E-24 proximal
Csa06g00073 Csa-Chr6:473104 Csa06g00074 Csa-Chr6:478360 2.12E-71 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00073 - - csv:101221838 816.609