Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00075 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTTATTATTCTTTTTCTCTTCTTCTCTCTCCCATCTTTCTCTATCTCTCTCTCTGAAGCCGAAGCTTCATATCTTACTCGTCGTCAACTATTGACTCTCAAAAACTATGATGAACTCCCCCTTGACTTTCAATACGAACTCGACATTCCTGACACTTTCCCAAACGAGAGGTTGAAGAAAGCTTATAGAGCCCTTCAAGCCTGGAAATTAGCTGTTTATTCCGACCCACAAAACATGACTGCCAATTGGGTAGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTCGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGACACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACCGATTCTGTGGGATCATTCCTTCTAGCTTCTCCAACCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCGAGTGCGAAGTACCTCGATCTCAGATACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAAGGACTTCGATGCCATCTTCCTAAACAACAATAGATTCAATTCCCTAATCCCTGACACCATCGGAAACTCCACCGTCTCCGTTGTCTCCTTCGCGAACAACGAATTCCATGGTTGCATTCCTAGCACTATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCCTCGGCAACAAGCTCAGCGGCTGTTTCCCACCTGAGATCGGAAACCTAGTCAATCTCACAGTTCTTTGA 876 45.78 MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDIAGHLPPELGLLTDLALFHINSNRFCGIIPSSFSNLVLMFEFDVSNNRFVGHFPLVVLEWPSAKYLDLRYNDFEGEIPSTLFTKDFDAIFLNNNRFNSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFLGNKLSGCFPPEIGNLVNLTVL* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 480204 481079 - CsaV3_6G000750.1 Csa06g00075 531702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00075 291 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 291 - -
Csa06g00075 291 Pfam Leucine rich repeat N-terminal domain 75 110 IPR013210 -
Csa06g00075 291 Gene3D Ribonuclease Inhibitor 75 215 IPR032675 -
Csa06g00075 291 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 11 291 - -
Csa06g00075 291 Gene3D Ribonuclease Inhibitor 216 291 IPR032675 -
Csa06g00075 291 SUPERFAMILY L domain-like 85 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00075 Csa-Chr6:480204 Csa06g00077 Csa-Chr6:492860 0 dispersed
Csa06g00075 Csa-Chr6:480204 Csa06g00076 Csa-Chr6:488593 9.94E-06 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00075 - - csv:116404782 572.778