Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00076 ATGGCTTCACTTCACAGAAAGCAAGCTCACCATGCTTGCTTTCTTATTATTCTTTTTCTCTTCTTCTCTCTCCCCTCTTTCTCTGTCTCTCTCTCAGAAGCCGAAGCTTCATATCTTACTCGTCGTCAACTATTGACTCTCAAAAACCATTATGAACTCCCCGATGACTTTCAATACGAACTTGACATTGCTGACACTTTCCCAAACGAGAGGTTGAAGAAAGCTTATGTAGCCCTTCAAGCGTGGAAATTAGCTGTTTATTCCGACCCACAAAACATGACTGCCAATTGGGTAGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTCGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGCACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACCGGTTCTGTGGGATCATTCCTTCTAGCTTCTCCAACCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGATTTGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCGAGTGCGAAGTACCTCGATCTCAGGTACAATGACTTTGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGACGCCATCTTCCTAAATAACAATAGATTCAATTCTCTAATCCCTGAAACCATTGGAAACTCTACCGTCTCCGTTGTCTCTTTTGCCAACAACGAATTCCATGGCTGCATTCCAAGCACCATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCCTCGGCAACAAGCTCAGCGGCTGTTTCCCACCTGAGATCGGAAACCTAGTCAATCTCACAGTCTTTGACGTCAGCAACAATGACTTCATAGGTCAATTGCCGGAATCCTTGTCTAGCCTCCAAAATTTAGAGATTATGGACGTTAGCAACAATGAATTGAGAGGCTCTGTCTCTGGAGGCCTTTGTAAGTTGCCTAAATTGGCTAACTTCACCTTCTCCTTTAATTACTTTAATGGAGAAGATGCGACATGTGCTACATCTAAAGGATCAGAGAAGCTCTTTGACGATAGTCAAAATTGTTTGGCAAATCGACCTATGCAGAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGACTGTGGAAATTGTGGTGGTGGGTCGAGTTCTCCTGGTGTGCCGTCGACCTTTGAGGATCCATATGATCAGTCTCCATCGCCAAGATATAGGTCTCCACCACCTCCGGTTGTGACTCCACCATCTCCAAGCGAGACCTCTGTTCCATCATCACCACCGTCTCCAATTGAGTCTTCACCACCAATCTCGACTCCATCCCCACCACCCCCTGTCAACTCTCCTCCACACCCCTGTTCACTCACCACCACCACCGGTTCACTCTCCACCACCCCCCGTCCACTCTCCACCCCCACCAGTCCATTCTCCACCTCCACCGGTCCATTCTCCACCGCCTCCCGTTTATTCTCCACCTCCACCGATCCATTCTCCACCACCACCCGTTTACTCTCCACCCCCACCGGTCCATTCTCCACCTCCACCGGTGTACTCTCCACCTCCACCAGTCCATTCTCCACCACCACCTGTGTACTCTCCACCCCCACCAGTCCATTCTCCACCACCACCTGTGTACTCTCCACCCCCACCAGTCCGTTCTCCACCACCACCTGTGTACTCTCCACCGCCACCACCAGTTCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCGCCTCCCTCTCATGA 1794 49.28 MASLHRKQAHHACFLIILFLFFSLPSFSVSLSEAEASYLTRRQLLTLKNHYELPDDFQYELDIADTFPNERLKKAYVALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDIAGHLPPELGLLTDLALFHINSNRFCGIIPSSFSNLVLMFEFDVSNNRFVGHFPLVVLEWPSAKYLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFNSLIPETIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFLGNKLSGCFPPEIGNLVNLTVFDVSNNDFIGQLPESLSSLQNLEIMDVSNNELRGSVSGGLCKLPKLANFTFSFNYFNGEDATCATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGNCGGGSSSPGVPSTFEDPYDQSPSPRYRSPPPPVVTPPSPSETSVPSSPPSPIESSPPISTPSPPPPVNSPPHPCSLTTTTGSLSTTPRPLSTPTSPFSTSTGPFSTASRLFSTSTDPFSTTTRLLSTPTGPFSTSTGVLSTSTSPFSTTTCVLSTPTSPFSTTTCVLSTPTSPFSTTTCVLSTATTSSISTTSNCISSSASLS* 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 488593 490687 - CsaV3_6G000760.1 Csa06g00076 531703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00076 597 Gene3D Ribonuclease Inhibitor 238 360 IPR032675 -
Csa06g00076 597 MobiDBLite consensus disorder prediction 467 533 - -
Csa06g00076 597 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 572 - -
Csa06g00076 597 MobiDBLite consensus disorder prediction 396 413 - -
Csa06g00076 597 SUPERFAMILY L domain-like 85 352 - -
Csa06g00076 597 MobiDBLite consensus disorder prediction 417 466 - -
Csa06g00076 597 Gene3D Ribonuclease Inhibitor 73 237 IPR032675 -
Csa06g00076 597 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 11 572 - -
Csa06g00076 597 MobiDBLite consensus disorder prediction 396 533 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00136 Csa-Chr2:948141 Csa06g00076 Csa-Chr6:488593 3.98E-143 dispersed
Csa03g01297 Csa-Chr3:9923062 Csa06g00076 Csa-Chr6:488593 4.37E-132 dispersed
Csa06g00073 Csa-Chr6:473104 Csa06g00076 Csa-Chr6:488593 0 dispersed
Csa06g00074 Csa-Chr6:478360 Csa06g00076 Csa-Chr6:488593 1.48E-68 dispersed
Csa06g00076 Csa-Chr6:488593 Csa07g00490 Csa-Chr7:3545325 4.93E-119 dispersed
Csa06g00075 Csa-Chr6:480204 Csa06g00076 Csa-Chr6:488593 9.94E-06 tandem
Csa06g00076 Csa-Chr6:488593 Csa06g00077 Csa-Chr6:492860 2.34E-06 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00076 - - csv:101221370 807.749