Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00077 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTTATTATTCTTTTTCTCTTCTTCTCTCTCCCATCTTTCTCTATCTCTCTCTCTGAAGCCGAAGCTTCATATCTTACTCGTCGTCAACTATTGACTCTCAAAAACTATGATGAACTCCCCCTTGACTTTCAATACGAACTCGACATTCCTGACACTTTCCCAAACGAGAGGTTGAAGAAAGCTTATAGAGCCCTTCAAGCCTGGAAATTAGCTGTTTATTCCGACCCACAAAACATGACTGCCAATTGGGTAGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTCGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGACACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACCGATTCTGTGGGATCATTCCTTCTAGCTTCTCCAACCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCGAGTGCGAAGTACCTCGATCTCAGATACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAAGGACTTCGATGCCATCTTCCTAAACAACAATAGATTCAATTCCCTAATCCCTGACACCATCGGAAACTCCACCGTCTCCGTTGTCTCCTTCGCCAACAACGAATTCCATGGTTGCATTCCTAGCACTATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCCTCGGCAACAAGCTCAGCGGCTGTTTCCCACCTGAGATCGGAAACCTAGTCAATCTCACAGTCTTTGACGTCAGCAACAATGACTTCATAGGTCAATTGCCGGAATCCTTGTCTAGCCTCCAAAATTTAGAGATTATGGACGTTAGCAACAATGAATTGAAGAGGCTCTGTCTCTGGAGGCCTTTGTAA 996 45.48 MASLHRKQANHACFLIILFLFFSLPSFSISLSEAEASYLTRRQLLTLKNYDELPLDFQYELDIPDTFPNERLKKAYRALQAWKLAVYSDPQNMTANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDIAGHLPPELGLLTDLALFHINSNRFCGIIPSSFSNLVLMFEFDVSNNRFVGHFPLVVLEWPSAKYLDLRYNDFEGEIPSTLFTKDFDAIFLNNNRFNSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFLGNKLSGCFPPEIGNLVNLTVFDVSNNDFIGQLPESLSSLQNLEIMDVSNNELKRLCLWRPL* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 492860 493855 + CsaV3_6G000770.1 Csa06g00077 531704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00077 331 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 323 - -
Csa06g00077 331 Gene3D Ribonuclease Inhibitor 73 327 IPR032675 -
Csa06g00077 331 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 11 323 - -
Csa06g00077 331 Pfam Leucine rich repeat N-terminal domain 75 110 IPR013210 -
Csa06g00077 331 SUPERFAMILY L domain-like 85 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00075 Csa-Chr6:480204 Csa06g00077 Csa-Chr6:492860 0 dispersed
Csa06g00077 Csa-Chr6:492860 Csa07g00490 Csa-Chr7:3545325 2.59E-99 dispersed
Csa06g00076 Csa-Chr6:488593 Csa06g00077 Csa-Chr6:492860 2.34E-06 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00077 - - csv:105434450 634.795