Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00083 ATGGAAAACAGCTCTTTTTATCAGAACATCAGGGGAGAGCCCACTCATGGTGGTCAATACATTCAATACAATGTGTATGGGAATCTGTTTGAAGTTTCTAGGAAGTATACTCCACCCATCAGGCCAGTTGGGAGAGGAGCTTATGGAATTGTGTGTGCTGCTTTGAACTCAGAAACAAATGAAGATGTTGCAATTAAGAAGGTTGGCAAGGCATTTGACAATAGAATTGATGCTAAAAGGACCTTACGAGAAATCAAGCTTCTTCGACACATGGATCATGAAAATATTATTGCTCTCAGAGATATTATAAGACCTCCTCAGAAGGAGAATTTCAATGATGTATACCTTGTTTATGAATTAATGGACACAGATCTAAATCAGATTATACGGTCCAACCAATCATTGACTGATGACCATTGCCGGTACTTTCTATATCAGTTGTTACGAGGGCTAAAATATGTGCATTCTGCTAATGTTCTACACCGTGATTTGAAACCAAGCAATTTGTTCCTCAATGCAAATTGTGACTTAAAAATTGGAGACTTTGGCCTTGCAAGGACAACTTCTGAAACTGATTTTATGACCGAGTATGTTGTTACTCGGTGGTATCGTGCACCCGAATTGCTCCTTAATTGTTCAGAATACACTGGAGCAATAGATATTTGGTCTGTTGGCTGTATACTTGGTGAAATTATGCACAGAAAACCATTGTTTCCAGGAAAAGACTATGTTCATCAGCTAAAACTTATCACTGAGCTCATTGGGTCACCAGATGAATCGAGTCTTGGATTCTTACGAAGTGACAATCCAAGAAGATATTTTAGGCATCTTCCTCACTTCCCCAAGCAACAGTTTTCCTCTAAATTTCCCACCATGTCTCCTGCTGCTATTGACTTGCTTGAGAAGATGCTAGTCTTTGATCCTACTAAGCGCATTACAGTTGATGAGGCGTTGTGCCATCCATATTTAGCACCTCTTCATGATATCAATGAGGAGCCAGTATGTCCAAGGCCTTTCAGTTTCGATTTCGAGCAACCAACGTACACCGAAGAAAACATCAAGGAACTTGTATGGAGGGAATCCTTGAGGTTCAACCCCGGTCCCGCTTTTTGA 1113 40.43 MENSSFYQNIRGEPTHGGQYIQYNVYGNLFEVSRKYTPPIRPVGRGAYGIVCAALNSETNEDVAIKKVGKAFDNRIDAKRTLREIKLLRHMDHENIIALRDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQSLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRKPLFPGKDYVHQLKLITELIGSPDESSLGFLRSDNPRRYFRHLPHFPKQQFSSKFPTMSPAAIDLLEKMLVFDPTKRITVDEALCHPYLAPLHDINEEPVCPRPFSFDFEQPTYTEENIKELVWRESLRFNPGPAF* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 532725 537713 - CsaV3_6G000830.1 Csa06g00083 531710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00083 370 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00083 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Csa06g00083 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Csa06g00083 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 14 368 - -
Csa06g00083 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Csa06g00083 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00083 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 368 - -
Csa06g00083 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Csa06g00083 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00083 370 CDD STKc_TEY_MAPK 30 366 - -
Csa06g00083 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Csa06g00083 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01274 Csa-Chr1:7989598 Csa06g00083 Csa-Chr6:532725 0 dispersed
Csa04g00548 Csa-Chr4:3646885 Csa06g00083 Csa-Chr6:532725 2.28E-143 dispersed
Csa06g00083 Csa-Chr6:532725 Csa06g02048 Csa-Chr6:18328621 0 dispersed
Csa01g02345 Csa-Chr1:20622744 Csa06g00083 Csa-Chr6:532725 0 transposed
Csa02g02081 Csa-Chr2:18981944 Csa06g00083 Csa-Chr6:532725 1.25E-87 transposed
Csa03g03954 Csa-Chr3:34572984 Csa06g00083 Csa-Chr6:532725 2.12E-53 transposed
Csa02g02080 Csa-Chr2:18979563 Csa06g00083 Csa-Chr6:532725 2.55E-56 transposed
Csa05g00251 Csa-Chr5:1523550 Csa06g00083 Csa-Chr6:532725 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78307 PF00069 Pkinase 3.70E-71 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00083 K20600 - csv:101215189 768.074