Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00126 ATGGATGGTTGGGTAACGTTTGGGAAATGTGTAGAGAATAGCAAAAAGAAGAGGGAGGCGTTAGAATTTGACCAAACCGAGACAATACTACGTCGTTTTAATGATTCAAGTCCTTTTACCAAAGTCTGCCGTAGTTGGAAGCCAAGCCCAAGACGGGTCTTAGAGCAACTCAACGCGTCCGAGTCACCTCCCTTCACTCGACTCGCTCCCTCATCTTCTCCGTCGCCACACCGAAGCCCACCTTTTCTTTTTCATTTTTCTTTTCCTTCTTCACACAATTTTAACAGACCCCATCGTCGAAACTTTTCGATTCGAAGCAAACCTTGTCGCTTTTGGACCTACACAATTAACCCCATTTACTCGATTTTGTTCTACATGAGTTTTGTCTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCTGAAAGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCGCTTGCCTTTCTTGTCACAGTCCTTTTGCTATTCATGATATTAAACTCTCACCAGATGTCACCTAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGTCTTCTTGGTCACACTGAATTAAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGGGAATTTGACGATCTAGATTATGAAACCTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACTCCTCTGTGAATCAGCAGGCTTCATCTTCAGAATCTATTGAGAAGAGACAAGATTCAGTTAATGCAGTTGGCAGTACCAAAACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCGTGGTTGCGACAGCAGGGAACATGCCCAGTCTGTAAATTCAGAGCAGTATCCGGATGGTCAGAACAGGAACAAGGCGAAACCGATGCTTATATGGTTTAG 1203 44.39 MDGWVTFGKCVENSKKKREALEFDQTETILRRFNDSSPFTKVCRSWKPSPRRVLEQLNASESPPFTRLAPSSSPSPHRSPPFLFHFSFPSSHNFNRPHRRNFSIRSKPCRFWTYTINPIYSILFYMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDSSVNQQASSSESIEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQEQGETDAYMV* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 830311 834193 - CsaV3_6G001260.1 Csa06g00126 531753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00126 400 MobiDBLite consensus disorder prediction 299 330 - -
Csa06g00126 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 384 IPR013083 -
Csa06g00126 400 SUPERFAMILY RING/U-box 333 386 - -
Csa06g00126 400 SMART ring_2 339 379 IPR001841 -
Csa06g00126 400 PANTHER TARGET OF ERK KINASE MPK-1 126 399 - -
Csa06g00126 400 ProSiteProfiles Zinc finger RING-type profile. 339 380 IPR001841 -
Csa06g00126 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 126 399 - -
Csa06g00126 400 MobiDBLite consensus disorder prediction 298 330 - -
Csa06g00126 400 CDD RING-H2_PA-TM-RING 338 380 - -
Csa06g00126 400 Pfam Ring finger domain 338 380 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01121 Csa-Chr3:8844664 Csa06g00126 Csa-Chr6:830311 4.08E-16 dispersed
Csa06g00126 Csa-Chr6:830311 Csa07g00481 Csa-Chr7:3479096 2.86E-12 dispersed
Csa06g02607 Csa-Chr6:22952859 Csa06g00126 Csa-Chr6:830311 1.46E-06 dispersed
Csa06g00126 Csa-Chr6:830311 Csa05g02990 Csa-Chr5:30206422 2.40E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00126 K16283 - csv:101216306 503.827