Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00131 ATGGCGAATTGGGGTGGAATTGGGAATCTTCCAACCACACCACTTGAATTTCAAAAAACAGAGCAACAACATAGTACTAAGAATTATGAAGATGGGGATGGAGTTAAACCCAAGAGGCGGCCACGAGGCCGGCCACGAGGCTCCAAAAACAAGCCGAAGCCACCGATTCTCATCGCCAAAATCACTCCCAACACCCTTCAAACCCACGTTTTCGAAATCGCCACCGCCACCGACATTGCCGACTCCATTTTCACCTTCACCCAACGCCGCCGCCGTGGGGTTTCCATTCTCAGCGCCACCGGCCTCGTCACTGACATCACTCTCCGTCAACCCCCCGGCGTCATCACCCTCCACCAACGCTTCGAGATCTTGTCTCTCTCTGGCGCCTTCCTTCCCACGCCCTCCCCCCACGGAACTTCCGCATTGACCGTCTATCTCGCTGGCGACCAAGGGCGTGTCGTCGGAGGCCTTGTCGCTGGCCCCATAATAGCCGCCGGCCCCGTGGTAGTAGTTGCAGCTTCATTTACCAATGCTATGTATGAAAAATTGCCGATGGAAGAAAATGAAGAGAAAACAGAGGAGGATAAGCAATTGGAAGAAAACATTAATGGAAACAAGAATTCAATGGGAGAATCATCATCATTAGCAGCAGCAAGTTCTTTGGGAGTTCATAATTTGATTCCTAACACTCAAATTTCACAAGAAACGTTTTGGGCTCCTCCTCCTCCTCCATCTTATTAA 741 50.74 MANWGGIGNLPTTPLEFQKTEQQHSTKNYEDGDGVKPKRRPRGRPRGSKNKPKPPILIAKITPNTLQTHVFEIATATDIADSIFTFTQRRRRGVSILSATGLVTDITLRQPPGVITLHQRFEILSLSGAFLPTPSPHGTSALTVYLAGDQGRVVGGLVAGPIIAAGPVVVVAASFTNAMYEKLPMEENEEKTEEDKQLEENINGNKNSMGESSSLAAASSLGVHNLIPNTQISQETFWAPPPPPSY* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 858735 860152 - CsaV3_6G001310.1 Csa06g00131 531758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00131 246 MobiDBLite consensus disorder prediction 202 216 - -
Csa06g00131 246 MobiDBLite consensus disorder prediction 184 216 - -
Csa06g00131 246 MobiDBLite consensus disorder prediction 184 201 - -
Csa06g00131 246 MobiDBLite consensus disorder prediction 1 56 - -
Csa06g00131 246 ProSiteProfiles PPC domain profile profile. 63 196 IPR005175 -
Csa06g00131 246 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 177 IPR005175 -
Csa06g00131 246 Gene3D - 67 196 - -
Csa06g00131 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 239 IPR014476 GO:0003680
Csa06g00131 246 MobiDBLite consensus disorder prediction 23 38 - -
Csa06g00131 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 239 - -
Csa06g00131 246 CDD DUF296 67 163 IPR005175 -
Csa06g00131 246 SUPERFAMILY AF0104/ALDC/Ptd012-like 64 189 - -
Csa06g00131 246 PIRSF ESCAROLA 12 239 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00131 Csa-Chr6:858735 Csa03g01009 Csa-Chr3:8151266 1.75E-61 dispersed
Csa05g00730 Csa-Chr5:5009609 Csa06g00131 Csa-Chr6:858735 3.21E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00131 - - csv:105435980 439.499