Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00134 ATGGACTTTCTTCACCTCAAAGGCGCCTCCACCGCTGCCGCTGCCGCTGCCGATAGTACAACCAGTGCTTCGTCGTCGTCGTCGTCTGGTGGACGCAAACGCCGCAGTATGCATTCGGTTTCAAGGAGGTGTGAAAATGAAGAGCATGAAAACAGGGGACAGAGGAAAGATGATGATGATGATGAAGATAACGTTGTTGTTGATGATGATGTTAAATATGGAGTTACTTCTGTTTGTGGAAGAAGAAGAGAAATGGAGGATATGGTTTCTGTTCATCTTTATTTTACTAATGAAAAGAATCTACCCCAAATTCCCATTCACTTTTTTGGGGTCTTCGACGGCCATGGCTGCTCTCATGTTTCGATGAGCTGTATGAATCGAATGCATGAAATAGTGAAAGAAGAGATTGATGAAAACGAATTAGAAGAAACAGAGGAGTGGAAGAAAATAATGAAGAGAAGCTTTAGGCGTATGGATGAGGAAGTGATGAAGGAGTACTCAAATAATATTAAACAGAGAGATGCTGCCGTTGCCGGCTCCTCCTCCTCCTCCTCCTCCTCCCACAATATTAGTTGCAGATGCGAACTCCAAACTTCTCATCAATATGACACCGTCGGATCAACTGCTCTGATTGTGTTATTGATGCCCCATAAGCTCATCATCGCCAACTGCGGCGATTCCCGCGCCGTCCTTTCCCGGAAAACTACTGGAATCCTCCCTCTTTCCTCCGACCATAAGCCGGATCGACCAGATGAATTGTCGAGAATAGAATCTGGAGGTGGGCACGTGATCCATTGGGAAGGGGCGAGGGTGTTGGGAGTTTTAGCAATGTCAAGAGCGATAGGCGACAGTTCTTTAAAACCTTACGTAATATCAGAGCCGGAGGTGGTGGTAATGGATCGAAGAATGGAGGATGAGTTTATCATACTGGCTACTGATGGCTTGTGGGACGTCGTTACAAATGAAACTGCGTGCGACGCAGTTCGAACATGCATGCGAGCACAGCGAGCGTCCTCGTCGTTGTCTTTGTTAGAAGAATCATCTGGTTCTATGGGCGGCGGCTCTGACAAAACATGTTCTGACGCCTCTATCTTGCTGACAAAGTTGGCGATCGCCAAGCATAGTTCAGATAACATTAGCATTGTGGTTATAGATTTGAGAAATACACATCATCATCATCATCACCACCACCACCACCACCACTGCTAA 1209 46.32 MDFLHLKGASTAAAAAADSTTSASSSSSSGGRKRRSMHSVSRRCENEEHENRGQRKDDDDDEDNVVVDDDVKYGVTSVCGRRREMEDMVSVHLYFTNEKNLPQIPIHFFGVFDGHGCSHVSMSCMNRMHEIVKEEIDENELEETEEWKKIMKRSFRRMDEEVMKEYSNNIKQRDAAVAGSSSSSSSSHNISCRCELQTSHQYDTVGSTALIVLLMPHKLIIANCGDSRAVLSRKTTGILPLSSDHKPDRPDELSRIESGGGHVIHWEGARVLGVLAMSRAIGDSSLKPYVISEPEVVVMDRRMEDEFIILATDGLWDVVTNETACDAVRTCMRAQRASSSLSLLEESSGSMGGGSDKTCSDASILLTKLAIAKHSSDNISIVVIDLRNTHHHHHHHHHHHHC* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 877776 879651 + CsaV3_6G001340.1 Csa06g00134 531761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00134 402 MobiDBLite consensus disorder prediction 1 67 - -
Csa06g00134 402 PANTHER ALPHABET, ISOFORM E-RELATED 22 390 - -
Csa06g00134 402 SMART PP2C_4 60 384 IPR001932 -
Csa06g00134 402 Pfam Protein phosphatase 2C 72 378 IPR001932 -
Csa06g00134 402 ProSitePatterns PPM-type phosphatase domain signature. 108 116 IPR000222 GO:0043169
Csa06g00134 402 SUPERFAMILY PP2C-like 71 388 IPR036457 -
Csa06g00134 402 Gene3D - 60 395 IPR036457 -
Csa06g00134 402 MobiDBLite consensus disorder prediction 14 34 - -
Csa06g00134 402 PANTHER PROTEIN PHOSPHATASE 2C 3 22 390 - -
Csa06g00134 402 SMART PP2C_SIG_2 86 386 IPR001932 -
Csa06g00134 402 CDD PP2Cc 72 386 IPR001932 -
Csa06g00134 402 ProSiteProfiles PPM-type phosphatase domain profile. 72 386 IPR001932 -
Csa06g00134 402 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02450 Csa-Chr1:21706055 Csa06g00134 Csa-Chr6:877776 1.01E-105 dispersed
Csa06g00134 Csa-Chr6:877776 Csa06g01923 Csa-Chr6:17350468 7.68E-41 dispersed
Csa01g02859 Csa-Chr1:25154173 Csa06g00134 Csa-Chr6:877776 2.49E-63 transposed
Csa02g01173 Csa-Chr2:11431223 Csa06g00134 Csa-Chr6:877776 1.31E-20 transposed
Csa03g01653 Csa-Chr3:12341428 Csa06g00134 Csa-Chr6:877776 7.09E-72 transposed
Csa03g02590 Csa-Chr3:24441967 Csa06g00134 Csa-Chr6:877776 9.75E-22 transposed
Csa03g04066 Csa-Chr3:35595281 Csa06g00134 Csa-Chr6:877776 7.87E-61 transposed
Csa06g02025 Csa-Chr6:18188911 Csa06g00134 Csa-Chr6:877776 2.73E-57 transposed
Csa01g02461 Csa-Chr1:21806317 Csa06g00134 Csa-Chr6:877776 1.75E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00134 K14497 - csv:101220425 670.618