Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00136 ATGGCATCCATTTCAAAACAGCTACTCCTCATCGTGGCGGCGCTACTCGCCACCGCAGAAATGGCTACCTCCATTACCCGATGTCCGGACTGCGGCGGGGCTGCCGTCCCCTATCCTCTAAGTACAAACCCCACTTGTGGTGACCAATTGTACAAGATCCGGTGCGACGCAGGCTCACTGAAATTCGACACGCTAAACAACTCGTACCCGATCATCTCAATCAACCCGTTGACCCAACGCCTGGTGATCCGTCCCTCAAATTTCATCCCCAACACGTGCGTGACAGCGGATATCGCCCACGAAGGAATTAAACTGAACAGTACTTTACCGTTCAACGTGACGAGCGGGAACACGATCCTCTACTTCAACTGTACAGATTTGCTGCTGCGCTCGCCGTTGAACTGCTCGTCGACGAGTCTGTGCCATTCGTACATCAAGGGATCGAGAGGAGAAGCGACGGCGTGCGAGATGGCGCCGTTGTGCTGCACGTTTCGGGCGGGTGGATCGTCGAATTCGTACATGATTAGGGTGAGGGAATCAGGGTGTAGAGCGTACACGAGCTTTGTGAATTTGGACCCGAGTTTGGGAGTGGGTCAATGGCCGGAACCGGGTTTAGAGTTGCAGTGGCTTCTGCCAAGGGAACCGGTTTGTAATACGGAGGCTGATTGTGACGGGAACGCGGTTTGTGGTGGTGATCCTAACGGAACGGGGTTGAGGCGCTGTGTTTGTAATTCAGGGTTTGTGTGGGACGCTGTTGCTGGAATCTGTTCTCAAAACACGTGTCATGATCCTGATGGGTGTAATCATCACCGAACTGCACTGATTGCAGGCGTTGTATCCGGTGTGGGTGCGGCGGTGGTGGTCTCAATAATAGCCATGCTATTGTACAATCGGCATAGAAGAGCAAAAGAAGCTCAAGATCGTTTAACAAAGGAGCGTGAAGCAATTTTAAATTCGGGCAGTGGAGGAGGAAGAGCGGCAAAAATCTTCACCGGGAAAGAGATCAAGAGGGCCACCCACAACTTCTCCGCAGACCGCCTTCTGGGTGTGGGTGGCTACGGGGAAGTCTACAAAGGCGTTCTTGAGGATGGTACGGCCGTGGCCGTGAAGTGCGCAAAGCTCGGAAACGCAAAGGGGACGGACCAAGTCCTGAATGAGGTCAGAATCCTCTGCCAAGTTAATCACCGGAGTCTTGTTCGGCTTCTTGGTTGCTGCGTCGAATTAGAACAGCCAATTTTGGTGTACGAGTATATCCCCAACGGCACTCTTCTCGACTATTTACAAGGTAAGAATGACACAAAGCCATTATCATGGGAGGAACGGCTCCGAATAGCGGAAGGCACAGCGGAGGGATTAGCATATCTTCATTTCTCAGCACTTCCACCCATCTACCACCGAGACGTGAAATCCAGCAACATCCTATTAGACCATAAGCTAATCCCCAAAGTTTCCGATTTCGGCCTCTCCCGATTGGCTGAAACAGATCTAAGCCATATCTCAACTTGCGCTCAAGGAACTCTGGGCTATCTAGACCCTGAGTACTATCGAAACTACCAATTGACGGACAAAAGCGATGTGTATAGCTTTGGAGTAGTTTTACTTGAATTGTTGACGTCGGAGAAGGCCATTGACTTCAGTCGGGATGCTGACGACGTGAATTTGGCGGTTTACGTGCAGCGATTGGTGGAGGAAGAGAGATTGGTGGATGGGATCGATCCGTGGTTGAAGAAAGGAGCGAGTGATGTGGAGGTTGATACAATGAAGGCCTTGGGGTTTCTTGCAGTTGGGTGTTTGGAACAGAGAAGGCAGAATCGGCCTTCTATGAAAGAAGTGGTGGAGGAGATTCAATACATCATTAGTATTGCCATTGCTAAGCCTTGA 1881 51.04 MASISKQLLLIVAALLATAEMATSITRCPDCGGAAVPYPLSTNPTCGDQLYKIRCDAGSLKFDTLNNSYPIISINPLTQRLVIRPSNFIPNTCVTADIAHEGIKLNSTLPFNVTSGNTILYFNCTDLLLRSPLNCSSTSLCHSYIKGSRGEATACEMAPLCCTFRAGGSSNSYMIRVRESGCRAYTSFVNLDPSLGVGQWPEPGLELQWLLPREPVCNTEADCDGNAVCGGDPNGTGLRRCVCNSGFVWDAVAGICSQNTCHDPDGCNHHRTALIAGVVSGVGAAVVVSIIAMLLYNRHRRAKEAQDRLTKEREAILNSGSGGGRAAKIFTGKEIKRATHNFSADRLLGVGGYGEVYKGVLEDGTAVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDYLQGKNDTKPLSWEERLRIAEGTAEGLAYLHFSALPPIYHRDVKSSNILLDHKLIPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSEKAIDFSRDADDVNLAVYVQRLVEEERLVDGIDPWLKKGASDVEVDTMKALGFLAVGCLEQRRQNRPSMKEVVEEIQYIISIAIAKP* 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 890174 894150 + CsaV3_6G001360.1 Csa06g00136 531763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00136 626 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Csa06g00136 626 ProSiteProfiles Protein kinase domain profile. 342 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00136 626 Gene3D Phosphorylase Kinase; domain 1 319 417 - -
Csa06g00136 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Csa06g00136 626 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 16 623 IPR045274 GO:0007166
Csa06g00136 626 SMART serkin_6 342 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00136 626 Pfam Protein tyrosine and serine/threonine kinase 345 614 IPR001245 GO:0004672|GO:0006468
Csa06g00136 626 PANTHER OS05G0318100 PROTEIN 16 623 - -
Csa06g00136 626 Gene3D Transferase(Phosphotransferase) domain 1 418 623 - -
Csa06g00136 626 CDD STKc_IRAK 348 616 - -
Csa06g00136 626 SUPERFAMILY Protein kinase-like (PK-like) 327 614 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03354 Csa-Chr3:30364616 Csa06g00136 Csa-Chr6:890174 0 dispersed
Csa04g00953 Csa-Chr4:7234540 Csa06g00136 Csa-Chr6:890174 3.92E-122 dispersed
Csa04g00954 Csa-Chr4:7240398 Csa06g00136 Csa-Chr6:890174 2.41E-171 dispersed
Csa04g01519 Csa-Chr4:14847537 Csa06g00136 Csa-Chr6:890174 0 dispersed
Csa06g00136 Csa-Chr6:890174 Csa06g00757 Csa-Chr6:6116077 1.05E-165 dispersed
Csa06g00136 Csa-Chr6:890174 Csa06g02887 Csa-Chr6:25086747 1.18E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78308 PF07714 PK_Tyr_Ser-Thr 1.10E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00136 - - csv:101220186 1241.48