Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00156 ATGACGACCGTCCAAGCCTCCCACGTTGTCGCAATGGATGTAGAACAACACCAACAACGCCCTCGCACTGACTCCGATGATGTGCGGCGGTGTTCGGTCCACTCCAGGGCTGACATTCTGGAGGAAGATGGGGTGGCGGTGGCGGCGGCGGCGGCGGTGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTCGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAAGGATTGCAGGATTTGTCATCTGAGTTTGGACGCTTCTAATCATGAATCTGGAATCCCTATTGAGCTGGGTTGTTCTTGTAAAGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTATGAAGCCGATTCAACAGAGCAACGCAATGAACCAAACGAAGCAACAACAGCAACTGCTACAGCTGCTATCGTGATGCCACCACACTCTACAGAGGCACGAAACTTCTGGCAAGGCCACAGGTTCCTGAACTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA 648 49.85 MTTVQASHVVAMDVEQHQQRPRTDSDDVRRCSVHSRADILEEDGVAVAAAAAVEKRRGSSVSECSVEMDLECGLAEIKVHLAKIEKDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1019769 1023242 - CsaV3_6G001560.1 Csa06g00156 531783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00156 215 SMART ringv_2 87 140 IPR011016 GO:0008270
Csa06g00156 215 PANTHER OS01G0850200 PROTEIN 16 215 - -
Csa06g00156 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 149 IPR013083 -
Csa06g00156 215 ProSiteProfiles Zinc finger RING-CH-type profile. 80 146 IPR011016 GO:0008270
Csa06g00156 215 Pfam RING-variant domain 88 139 IPR011016 GO:0008270
Csa06g00156 215 MobiDBLite consensus disorder prediction 1 27 - -
Csa06g00156 215 PANTHER ZINC FINGER, RING-CH-TYPE 16 215 - -
Csa06g00156 215 SUPERFAMILY RING/U-box 85 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00145 Csa-Chr5:797179 Csa06g00156 Csa-Chr6:1019769 4.87E-10 dispersed
Csa06g00156 Csa-Chr6:1019769 Csa06g03713 Csa-Chr6:29687742 1.66E-28 dispersed
Csa04g02044 Csa-Chr4:20643086 Csa06g00156 Csa-Chr6:1019769 5.41E-10 transposed
Csa01g02480 Csa-Chr1:21906292 Csa06g00156 Csa-Chr6:1019769 5.72E-50 wgd
Csa03g03129 Csa-Chr3:29161209 Csa06g00156 Csa-Chr6:1019769 1.68E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00156 - - csv:101207404 417.157