Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00168 ATGGCAACGACCGAGACCACAGTTTTGCAATTTTCACACTCTTCTAACACTTTATCTGCCAAGGTTCATCCTTTGGTTATCTTCAACATTTGTGATTGCTATGTCAGGCGCCCCGACCAGGCCGATCGAGTCATTGGTACTCTTCTTGGCTCGGTTTTACCTGATGGAACTGTTGATATTCGTAACTCTTATGCTGTTCCCCATAACGAGTTCTCGGATCAGGTTGCGCTGGATATTGACTATCATCACAATATGTTAAGTTCACATCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCCACTGGTACGGGAGTAACGGGTGGCAGTGCATTGATACACGAATTTTATTCAAGAGAAGTTGCAAACCCTATTCACCTTACTGTTGATACTGGGTTTAAGAATGGTGAAGGGACGATAAAAGCATATATCTCTGTCAATTTGTCCCTGGGAGATAGACAGCTTGCTGCTCAGTTTCAAGAAATTCCTTTGGATCTTCGAATGGTCGAAGCTGAGAGACTTGGATTTGATATTCTGAAGACAACTTCTATTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATCGACGACATTTATAAATATGTTGATAACGTTGTGGAAGGGCACGTTGAGGCTGACAACACGATAGGGAGATTTCTAGCTGACACTGTAGCATCTCTTCCAAAACTGTCGCCAGCTGCTTTTGATAAGCTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATTACCCGGACACAGTTGAGCTTGGCTGAAAAGTTGAATACCGCAGCTCAGATCCTGTAA 858 42.54 MATTETTVLQFSHSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSIDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1127337 1130783 - CsaV3_6G001680.1 Csa06g00168 531795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00168 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Csa06g00168 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 18 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Csa06g00168 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 18 284 - -
Csa06g00168 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Csa06g00168 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Csa06g00168 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
Csa06g00168 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Csa06g00168 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Csa06g00168 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00168 Csa-Chr6:1127337 Csa07g01036 Csa-Chr7:9717817 1.01E-11 dispersed
Csa03g03099 Csa-Chr3:29043685 Csa06g00168 Csa-Chr6:1127337 8.49E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00168 K03249 - csv:101205957 563.533