Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00193 ATGAGAGGTTGGCATGAAACTCGTTCTTCATCTTCTTGTGCAGCTTGCAAATTGTTGAAAAGAAGATGTATTCCCACTTGTATTTTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCATAAGGTTTTTGGGGCAAGTAATGTTAGTAAGATTTTGACTGAAGTTCCTGAAGAACAGAGAGAAGATACTGTTAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTTAGAGATCCTGTTTACGGCTGCATTGGTGCTATAGCTTTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCTCTTGCTAAAGCTCGTCTCGCTCGTTACGCTAATAATAACACTTCCTCTTCTTCTTCTTCTTCTTCTTGTGTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGCTGAGCAGAGTTCTTCTGATGATATCACCCAATATGGATATTTATGTGATTTCACCCATTTTCCTTATCCATTTAAAGCTTGA 519 38.15 MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQSSSDDITQYGYLCDFTHFPYPFKA* 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1330357 1331243 - CsaV3_6G001930.1 Csa06g00193 531820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00193 172 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Csa06g00193 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 148 - -
Csa06g00193 172 Coils Coil 91 118 - -
Csa06g00193 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 148 - -
Csa06g00193 172 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03970 Csa-Chr3:34700634 Csa06g00193 Csa-Chr6:1330357 1.76E-50 dispersed
Csa05g01896 Csa-Chr5:22166489 Csa06g00193 Csa-Chr6:1330357 1.69E-48 dispersed
Csa06g00193 Csa-Chr6:1330357 Csa06g01169 Csa-Chr6:9817253 1.28E-46 dispersed
Csa05g00849 Csa-Chr5:6402429 Csa06g00193 Csa-Chr6:1330357 5.17E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31897 PF03195 LOB 1.40E-38 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00193 - - csv:101222226 333.954