Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00201 ATGGTCGAGAAAATGGGTCACAGTGATCAATATTCTGATGCAATTTCTTTACCTACAAATTCAATCAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCCAAGTGGAAAGCATATAATGAATGTTTCGATTCTAGTAATAATGGTGGCAAGCTTATCCGTAAAGCTCCAGCAAAAGGGTCTAAGAAAGGATGTATGAAAGGCAAAGGAGGACCCTTAAATTCACATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGAAAATGGGTTGCTGAGATTCGTGAACCCAATAGAGGGAGTAGGCTTTGGCTTGGTACTTTCCCTACTGCCATTGAAGCTGCTCTTGCCTACGACGAGGCTGCAAGGACGATGTACGGTCAGACTGCTCGTTTAAACCTTCCCAACATTAAAAATAGAGGGCAGCTACAGGGGATTCTCTTGGAGGAATACCTGGGGCTGCGTAACTCGGATTCTTCAACCACTACTTCTGCATGTTCAGAATCGACTACTACGACTTCCAACCAATCTGAGGTCTGTGTGCCTGAGGAGTTCACAATGAGGCCACGACTTGTTTCCTTAAACGTGAAGACTGAAGATGGAGAAGGTGAATCGAAGACCGGTGATCATGGTGATGAGACTGCAACACCGATGAATCAAGTGAAACATGAGGATCGTAATGATCAGCTAGTTGCATTAGGGGCTGAGTTTCCTTGTCTGGATCAGTTGGAGAACTTTCAAATGGATGAAATGTTCGAGCCAAGGACGGGGACTCAGGCTGGCCATATGGTGATGCCAGTGAGCTTAGAGAAGCAAGTGAAGGATGAAGATCTGGATGCTGTATATTGTGGACGGAGTGATGATCAAGCAGTCTTATCAGAAGCTGGGGTTCCAAGTCTATATGATTTACATAACTTTCAAATGGATGAATTGTTTGATGTGGAAGAGCTTTTAAGTCTCATAAATAGTGATTCCTTGCATGATCCAACAAACATCGTGAAGGGCAATGCAGATGCTTATACGAACATGGCGCCTTCTCATGTTGGCAGTGTTGGGTCTGAGAAGCCACCAAATAGGTCATACCAAATCCAAAATCCCGACGCTAAGCTTCTCGGAAGTCCCCAACAGATGGAGCGAACTCCGGCCGATGTTGACTACGGATTTGATTTCCTGAAGCAGGGAAGGGAGGAGGATCTGAATGCAGCAGCAGATGATTGTGTTAGATACCTGAACGAAATTGGTGATTTAGGATTTTGA 1278 45.31 MVEKMGHSDQYSDAISLPTNSIRKRKSRSRRDRSTVAETLAKWKAYNECFDSSNNGGKLIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGQTARLNLPNIKNRGQLQGILLEEYLGLRNSDSSTTTSACSESTTTTSNQSEVCVPEEFTMRPRLVSLNVKTEDGEGESKTGDHGDETATPMNQVKHEDRNDQLVALGAEFPCLDQLENFQMDEMFEPRTGTQAGHMVMPVSLEKQVKDEDLDAVYCGRSDDQAVLSEAGVPSLYDLHNFQMDELFDVEELLSLINSDSLHDPTNIVKGNADAYTNMAPSHVGSVGSEKPPNRSYQIQNPDAKLLGSPQQMERTPADVDYGFDFLKQGREEDLNAAADDCVRYLNEIGDLGF* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1371453 1373959 - CsaV3_6G002010.1 Csa06g00201 531828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00201 425 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Csa06g00201 425 SUPERFAMILY DNA-binding domain 85 142 IPR016177 GO:0003677
Csa06g00201 425 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Csa06g00201 425 Gene3D AP2/ERF domain 85 143 IPR036955 GO:0003700|GO:0006355
Csa06g00201 425 CDD AP2 84 143 IPR001471 GO:0003700|GO:0006355
Csa06g00201 425 MobiDBLite consensus disorder prediction 204 224 - -
Csa06g00201 425 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 19 404 - -
Csa06g00201 425 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Csa06g00201 425 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Csa06g00201 425 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Csa06g00201 425 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 404 - -
Csa06g00201 425 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa05g00859 Csa06g00201 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00201 Csa-Chr6:1371453 Csa01g01689 Csa-Chr1:13278059 1.29E-24 dispersed
Csa06g01061 Csa-Chr6:8697980 Csa06g00201 Csa-Chr6:1371453 9.39E-49 transposed
Csa04g01662 Csa-Chr4:15924998 Csa06g00201 Csa-Chr6:1371453 1.17E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31898 PF00847 AP2 1.10E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00201 - K09286 csv:101215431 782.326