Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00218 ATGTCAAGAGAAAGGGAATTACAAGAAGTGGACGAGATAGGGAAGAAGATAAAGAGAGAAATTGAAAGTAGTAATTTGTTCTATGATCCTAATTTAATGGGGAGAAGAAATAATAACAACAATAATAATTTGATTTTGAGCAGTAGTAGTAGCAGTCAAAGTAGTGGGATCAGTAATTTGAATACAATAACACCATGTGCAGCTTGTAAGCTTCTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCTTATTTTTCTCCACATGAACCACACAAATTTGCTTCTGTTCATAAGGTTTTTGGTGCTAGCAACGTTGCTAAGATGCTAATGGAAGTACCGGAGAATCAAAGAGCGGACGCAGCAAATAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCTGTTTACGGTTGCATGGGAGCCATCTCTGCTCTTCAACACCAACTTCATACTTTACAATCTGACCTCAATGCCATTACTACTCAAATTTTCAAATACAAATTTACTCATCACCCCATCAATATCCCTTCTTCTCCTAATTTCATGGCCCCCTCCCCCGCTGCTACCCCGCCTGTTGCCCCGCCAACTCCGCCTCATTCTCAGCCGCCTCCGCTCTCTCTTCCACCACCTCTTCCTCCTTCCTCCTCCTCCTCCTCCGTCTTTTCCCCTCCCATTATTACTACTGCCACTTCTACCACCGTCGTTGAATTAATTAACCCTATTGTCCCAACAAGTACTCAACATATCTCCTACTTTGGTTAA 768 41.8 MSRERELQEVDEIGKKIKREIESSNLFYDPNLMGRRNNNNNNNLILSSSSSSQSSGISNLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPENQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLHTLQSDLNAITTQIFKYKFTHHPINIPSSPNFMAPSPAATPPVAPPTPPHSQPPPLSLPPPLPPSSSSSSVFSPPIITTATSTTVVELINPIVPTSTQHISYFG* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1497292 1499022 - CsaV3_6G002180.1 Csa06g00218 531845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00218 255 Coils Coil 144 164 - -
Csa06g00218 255 MobiDBLite consensus disorder prediction 181 224 - -
Csa06g00218 255 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 255 - -
Csa06g00218 255 PANTHER BNAA03G19070D PROTEIN 47 255 - -
Csa06g00218 255 MobiDBLite consensus disorder prediction 185 219 - -
Csa06g00218 255 Pfam Lateral organ boundaries (LOB) domain 65 160 IPR004883 -
Csa06g00218 255 ProSiteProfiles LOB domain profile. 64 165 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00218 Csa-Chr6:1497292 Csa06g01169 Csa-Chr6:9817253 9.23E-53 dispersed
Csa05g00883 Csa-Chr5:6752730 Csa06g00218 Csa-Chr6:1497292 3.17E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31900 PF03195 LOB 5.40E-40 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00218 - - csv:101214467 386.726