Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00228 ATGGCTCCTTCATCACTACTCTCTTCTCTTTCTGTTTTCTTCCTCATTTTCCTTCCTTCAATCTCTGCCGATTACGGCCACGCCACCTTCTACGGCGGTGGTGACGCTTCTGGCACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGAACGAACACGGCGGCGCTTAGTACTGCTCTCTTCAACAATGGTCTCAGCTGTGGCTCTTGCTATGAAATCACTTGCAACAGTGATCCTAAATGGTGTCTTCCCGGAAAAATCATCGTCACCGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTTCAACACTTCGATTTGGCTGAGCCTGCCTTTCTCCAAATCGCTCAGTACCGTGCCGGAATCGTTCCCGTTTCTTTCCAAAGAGTACCCTGTATGAAGAAGGGAGGAATAAGATTCACCATTAACGGACATTCATACTTCAACTTAGTTCTAATCACCAATGTGGGCGGCGCCGGAGACATCCATTCGGTGTCAATCAAAGGTTCGAAAACAGGGTGGCAAGCGATGTCAAGAAATTGGGGTCAGAATTGGCAGAGCAACAATTACTTGAATGGACAGAGCCTCTCTTTCCAAGTCACCACCAGCGACGGCCGTACCGTCACTAGCTACGACGCCGTTCCGGCGAACTGGCAGTTCGGTCAGACGTTCGAGGGAGGCCAATTCTAA 738 49.86 MAPSSLLSSLSVFFLIFLPSISADYGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDIHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQTFEGGQF* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1563531 1565320 - CsaV3_6G002280.1 Csa06g00228 531855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00228 245 SUPERFAMILY PHL pollen allergen 150 242 IPR036749 -
Csa06g00228 245 PRINTS Expansin/Lol pI family signature 22 37 IPR007118 GO:0005576
Csa06g00228 245 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Csa06g00228 245 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Csa06g00228 245 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Csa06g00228 245 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Csa06g00228 245 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Csa06g00228 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 242 IPR007117 -
Csa06g00228 245 Pfam Expansin C-terminal domain 154 231 IPR007117 -
Csa06g00228 245 Gene3D - 152 245 IPR036749 -
Csa06g00228 245 Gene3D - 20 149 IPR036908 -
Csa06g00228 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 153 IPR007112 -
Csa06g00228 245 PANTHER EXPANSIN-A15 23 245 IPR002963 GO:0009664
Csa06g00228 245 PANTHER EXPANSIN 23 245 - -
Csa06g00228 245 PRINTS Expansin signature 53 67 IPR002963 GO:0009664
Csa06g00228 245 PRINTS Expansin signature 80 91 IPR002963 GO:0009664
Csa06g00228 245 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Csa06g00228 245 PRINTS Expansin signature 111 128 IPR002963 GO:0009664
Csa06g00228 245 PRINTS Expansin signature 128 141 IPR002963 GO:0009664
Csa06g00228 245 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Csa06g00228 245 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Csa06g00228 245 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Csa06g00228 245 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Csa06g00228 245 SUPERFAMILY Barwin-like endoglucanases 12 171 IPR036908 -
Csa06g00228 245 SMART dpbb_1 58 143 IPR007112 -
Csa06g00228 245 Pfam Lytic transglycolase 58 143 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02468 Csa-Chr5:26468526 Csa06g00228 Csa-Chr6:1563531 2.84E-141 dispersed
Csa05g02995 Csa-Chr5:30259871 Csa06g00228 Csa-Chr6:1563531 7.34E-126 dispersed
Csa06g00228 Csa-Chr6:1563531 Csa06g01479 Csa-Chr6:12545225 2.13E-123 dispersed
Csa05g00892 Csa-Chr5:6920508 Csa06g00228 Csa-Chr6:1563531 5.60E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00228 - K20628 csv:101217496 475.322