Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00234 ATGAAAAGGCTACTGGGGTTGTTCGTCTTGTTTGTTGTGGTTCCAGTGTTGGTGAGATCTCTGAACCCACCTTTGAACGAAGACGTTTTGGGGCTGATTGTGTTCAAGGCCGACATTGAAGACCCTGAAGGGAAACTCGCCTCGTGGAATGAAGATGACGATAACCCATGTAATTGGGTTGGTTTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTTAATCTTGATGGCTTCTCACTCAATGGCAGGCTTGGTCGTGGTCTTCTTCAATTGCAGTTTCTTCGTAAACTCTCTCTTGCGAACAACAATCTTACTGGAAATTTAAGTCCCAATAATGCTCGCTTTGAAAATCTTCGAGTGGTTGATTTAAGCGGCAATGGGTTTCATGGGATGATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAACAACAAAATTTCAGGGAAAATCCCGGAAAGTTTGAGCTCTTGTTCCAGTCTTGCTGCTGTAAATTTATCTTCTAATCAGTTTTCAGGTTCATTGCCGTCTGGGATTTGGTCCTTAACTGGGCTTCGATCTTTGGATTTGTCTGATAATATTTTGGAAGGTGAAATTCCACCGGAGGTGAAGGGTATGAATAATTTGCGAGCTGTTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGCATTGGGAGTTGTATGCTCTTGAGGTCTGTTGATCTCAGTGAAAATTCTTTCTCCGGCAACGTTCCGGCGACAATGAAGAAGCTTAGTTTATGCAGTACTCTTAATTTAAGAAGGAACTTATTTCAAGGGGAGGTTCCTGAATGGATTGGTGGAATGGAAGGCCTTGAAATCTTGGACCTTTCAGGGAATAGGTTTTCTGGTCCTATTCCAAGTTCATTTGGGAATCTTCAAAAACTGAAGGTTTTGAATGTTTCCGGAAATGGTTTAACTGGTAGCTTGGCAGAGTCCATAGTTCCATCTCAAAACCTTTCAGCTATGGATCTCGGTCACGGTTCTCTCACCGGTGTTCTTCCGGCCTGGATTCTGAAGCTGGGTTCGCAAAATGTATTGCCTTCTGATATCAAAAGAAGCTCTCTTTCTACAACTGTGGGAAAGGCTCTTGTTAATCTTCAAGTTTTAGATTTGTCTCACAATGCATTTTCTGGTGAAATTTCACCTGATATTGGGATATTAAGTAGCTTGCAGGTGTTGAATCTGTGTAAGAACTCATTTGTTGGTGCTATTCCGGAGAGTATTGGAGGCCTGAAGGCCTTGGTTTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAAGCATTCCCGAAACACTTGGCAGAGATGTATCTTTGAAAGAATTGAGACTGGGGAAGAACTTGCTGGAGGGTGGGGTTCCAAATTCAGTGGGGAACTGTTCTTCACTTGTAACTTTGGACGTATCGGAAAACAGATTAACTGGCTCCATACCAGCAGAATTGTCTCAACTGATCAATCTTCAAATTGTGGACTTGTCAACAAACAATCTCAGTGGTGCATTGCCAAAACAGTTGGCTAATCTTCCTAACCTTCTTTTGTTTAACATTTCTCACAACAATCTGCAAGGTGAACTACCTGCAGGTGGGTTTTTCAATACAATCTCCCCCTCCTCTGTAGCTGGAAATCCTTCTCTTTGTGGTTCTATTGTCAAGAGGTCTTGCCCAGGTGTCCTTCCAAAGCCCATTGTTCTCAACCCCAACTCATCTTCTGACGCGGGTTCTACTTCATTACCTACAACTCTTGGTCACAAAAGAATCATCCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCTGCTGTTATCCTCGTCGGTGTAGTTGCGATCACTGTCATTAACCTCCATGTTCGGTCATCTGCGAATCGTCCTGAAGCAGCCATCACGTTTTCAGGAGGGGATGACTTCAGCCACTCCCCAACTACGGATGCTAATTCTGGCAAGCTTGTCATGTTTTCAGGAGAGCCTGATTTCAGTACCGGTGCACATGCTCTCCTTAACAAGGATTGTGAGCTTGGCCGTGGCGGATTTGGAGCTGTTTACCAAACTGTTCTTCGTGATGGACATCCCGTTGCAATAAAAAAGCTCACTGTTTCAAGTCTAGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAGTTGGGGAAAGTTAGGCACCAAAATCTTGTGGCTTTAGAAGGTTATTACTGGACTCCATCTCTGCAGCTTCTCATATATGAATTTGTGTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGGTTGGGTGGAAACATCCTCTCATGGAATGAAAGGTTCAACATAATCCTCGGAACTGCGAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAACATAAAATCAAGCAATGTACTGATTGATAGTTCGGGGGAACCTAAAGTTGGAGATTTTGGCTTAGCAAGATTGTTACCGATGCTTGATCGGTACGTGCTGAGCAGCAAGATACAAAGCGCACTAGGATACATGGCACCTGAGTTTGCCTGCAAAACGGTTAAGATAACAGAGAAATGTGATGTGTATGGATTTGGAGTTCTGGTTCTTGAAGTGGTAACAGGGAAGAGACCTGTGGAATACATGGAAGACGACGTGGTGGTACTTTGCGACATGGTTCGGCGGGAGCTGGAAGAAGGTCGGGTGGAGGAATGCATTGATGGGAGGCTCCAGAGGAATTTTCCATTAGAAGAGGCCATACCAGTAGTGAAACTAGGCTTGATATGCACATCTCAGGTGCCATCGAACCGACCCGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATGA 2895 43.97 MKRLLGLFVLFVVVPVLVRSLNPPLNEDVLGLIVFKADIEDPEGKLASWNEDDDNPCNWVGLKCNPRSNRVVELNLDGFSLNGRLGRGLLQLQFLRKLSLANNNLTGNLSPNNARFENLRVVDLSGNGFHGMIPDDFFRQCGSLRVISLANNKISGKIPESLSSCSSLAAVNLSSNQFSGSLPSGIWSLTGLRSLDLSDNILEGEIPPEVKGMNNLRAVNLGKNRFSGQIPDGIGSCMLLRSVDLSENSFSGNVPATMKKLSLCSTLNLRRNLFQGEVPEWIGGMEGLEILDLSGNRFSGPIPSSFGNLQKLKVLNVSGNGLTGSLAESIVPSQNLSAMDLGHGSLTGVLPAWILKLGSQNVLPSDIKRSSLSTTVGKALVNLQVLDLSHNAFSGEISPDIGILSSLQVLNLCKNSFVGAIPESIGGLKALVFLDLSENQLNGSIPETLGRDVSLKELRLGKNLLEGGVPNSVGNCSSLVTLDVSENRLTGSIPAELSQLINLQIVDLSTNNLSGALPKQLANLPNLLLFNISHNNLQGELPAGGFFNTISPSSVAGNPSLCGSIVKRSCPGVLPKPIVLNPNSSSDAGSTSLPTTLGHKRIILSISALIAIGAAAVILVGVVAITVINLHVRSSANRPEAAITFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRELEEGRVEECIDGRLQRNFPLEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG* 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1602954 1606992 - CsaV3_6G002340.1 Csa06g00234 531861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00234 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Csa06g00234 964 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Csa06g00234 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 1 962 - -
Csa06g00234 964 SUPERFAMILY L domain-like 115 360 - -
Csa06g00234 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Csa06g00234 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00234 964 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Csa06g00234 964 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Csa06g00234 964 SMART LRR_typ_2 309 332 IPR003591 -
Csa06g00234 964 SMART LRR_typ_2 428 452 IPR003591 -
Csa06g00234 964 SMART LRR_typ_2 285 308 IPR003591 -
Csa06g00234 964 SMART LRR_typ_2 500 523 IPR003591 -
Csa06g00234 964 SMART LRR_typ_2 524 548 IPR003591 -
Csa06g00234 964 SMART LRR_typ_2 213 237 IPR003591 -
Csa06g00234 964 SMART LRR_typ_2 116 140 IPR003591 -
Csa06g00234 964 SMART LRR_typ_2 380 404 IPR003591 -
Csa06g00234 964 SMART LRR_typ_2 189 212 IPR003591 -
Csa06g00234 964 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 962 - -
Csa06g00234 964 SUPERFAMILY Protein kinase-like (PK-like) 684 954 IPR011009 -
Csa06g00234 964 SUPERFAMILY L domain-like 380 563 - -
Csa06g00234 964 Gene3D Phosphorylase Kinase; domain 1 674 757 - -
Csa06g00234 964 CDD STKc_IRAK 687 953 - -
Csa06g00234 964 Pfam Protein tyrosine and serine/threonine kinase 683 949 IPR001245 GO:0004672|GO:0006468
Csa06g00234 964 Gene3D Ribonuclease Inhibitor 288 573 IPR032675 -
Csa06g00234 964 Pfam Leucine Rich Repeat 192 212 IPR001611 GO:0005515
Csa06g00234 964 Pfam Leucine Rich Repeat 288 309 IPR001611 GO:0005515
Csa06g00234 964 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Csa06g00234 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa05g00901 Csa06g00234 CCT
Csa05g00901 Csa06g00234 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00234 Csa-Chr6:1602954 Csa06g03305 Csa-Chr6:27687678 3.09E-18 dispersed
Csa01g02622 Csa-Chr1:23206231 Csa06g00234 Csa-Chr6:1602954 1.28E-47 transposed
Csa03g00336 Csa-Chr3:2797580 Csa06g00234 Csa-Chr6:1602954 0 transposed
Csa03g02997 Csa-Chr3:28544297 Csa06g00234 Csa-Chr6:1602954 0 transposed
Csa04g00347 Csa-Chr4:2104623 Csa06g00234 Csa-Chr6:1602954 0 transposed
Csa05g00901 Csa-Chr5:6985023 Csa06g00234 Csa-Chr6:1602954 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78312 PF07714 PK_Tyr_Ser-Thr 4.90E-41 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00234 - - csv:101217024 1813.51