Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00242 ATGCCCTTCTCCCTCTTTATATGTCAAAGCAGAGCCCAAAACCCTAACAAATATCAAACCTCCCCTCTTACTGCACGCTCCGGCACCTCCAAAACTCCATCTCGAGAGAAGTCGCATCACTTTGAAATGGCGGTCGCTTTCCCAGATGTCAAGTCAGCATCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCTAAGGATGATGTTACCGTTTACGAAGCGCTCTCCAAACCCGTATCCAGCGAATATGTTAACGTGTCTAGGTGGTCCAATCACATTGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGTGTTAAGTTGGACGCAGTTGCAACCCCACCGGCTGCTGATGCAAAGGCTGCCGATGATGATGATGATGATGACGACATGGATCTATTTGGAGAAGAGACCGAAGAGGAGAAGAAGGCTGCTGAGGAGCGCGCAGCTGCCGTCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGATATCAAACCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGGAGTGTTCAGATGGAAGGCTTGCTTTGGGGAGCATCGAAACTTGTCCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTGTCTGTTGACAATCTCATTGAGGAATATTTGACAGTTGAACCCATAAATGAGCATGTTCAGAGCTGTGACATCGTTGCCTTCAACAAAATATAA 798 45.61 MPFSLFICQSRAQNPNKYQTSPLTARSGTSKTPSREKSHHFEMAVAFPDVKSASGLKKLDEYLLSRSYISGYQPSKDDVTVYEALSKPVSSEYVNVSRWSNHIEALLRVSAVFGEGSGVKLDAVATPPAADAKAADDDDDDDDMDLFGEETEEEKKAAEERAAAVKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEYLTVEPINEHVQSCDIVAFNKI* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1666846 1669449 - CsaV3_6G002420.1 Csa06g00242 531869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00242 265 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 43 265 - -
Csa06g00242 265 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 140 148 IPR001326 GO:0003746|GO:0005853|GO:0006414
Csa06g00242 265 Gene3D - 169 265 IPR014717 -
Csa06g00242 265 MobiDBLite consensus disorder prediction 134 149 - -
Csa06g00242 265 MobiDBLite consensus disorder prediction 17 31 - -
Csa06g00242 265 CDD EF1B 174 265 IPR014038 GO:0003746|GO:0006414
Csa06g00242 265 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 43 265 - -
Csa06g00242 265 MobiDBLite consensus disorder prediction 127 155 - -
Csa06g00242 265 SMART EF1_GNE_2 176 265 IPR014038 GO:0003746|GO:0006414
Csa06g00242 265 SUPERFAMILY eEF-1beta-like 173 265 IPR036219 -
Csa06g00242 265 SUPERFAMILY GST C-terminal domain-like 50 111 IPR036282 -
Csa06g00242 265 Gene3D - 29 117 - -
Csa06g00242 265 Coils Coil 148 168 - -
Csa06g00242 265 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 254 265 IPR001326 GO:0003746|GO:0005853|GO:0006414
Csa06g00242 265 MobiDBLite consensus disorder prediction 17 37 - -
Csa06g00242 265 Pfam EF-1 guanine nucleotide exchange domain 178 265 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00958 Csa-Chr1:5938320 Csa06g00242 Csa-Chr6:1666846 2.36E-115 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00242 K03232 - csv:101215827 441.039