Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00242 | ATGCCCTTCTCCCTCTTTATATGTCAAAGCAGAGCCCAAAACCCTAACAAATATCAAACCTCCCCTCTTACTGCACGCTCCGGCACCTCCAAAACTCCATCTCGAGAGAAGTCGCATCACTTTGAAATGGCGGTCGCTTTCCCAGATGTCAAGTCAGCATCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCTAAGGATGATGTTACCGTTTACGAAGCGCTCTCCAAACCCGTATCCAGCGAATATGTTAACGTGTCTAGGTGGTCCAATCACATTGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGTGTTAAGTTGGACGCAGTTGCAACCCCACCGGCTGCTGATGCAAAGGCTGCCGATGATGATGATGATGATGACGACATGGATCTATTTGGAGAAGAGACCGAAGAGGAGAAGAAGGCTGCTGAGGAGCGCGCAGCTGCCGTCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGATATCAAACCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGGAGTGTTCAGATGGAAGGCTTGCTTTGGGGAGCATCGAAACTTGTCCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTGTCTGTTGACAATCTCATTGAGGAATATTTGACAGTTGAACCCATAAATGAGCATGTTCAGAGCTGTGACATCGTTGCCTTCAACAAAATATAA | 798 | 45.61 | MPFSLFICQSRAQNPNKYQTSPLTARSGTSKTPSREKSHHFEMAVAFPDVKSASGLKKLDEYLLSRSYISGYQPSKDDVTVYEALSKPVSSEYVNVSRWSNHIEALLRVSAVFGEGSGVKLDAVATPPAADAKAADDDDDDDDMDLFGEETEEEKKAAEERAAAVKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEYLTVEPINEHVQSCDIVAFNKI* | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1666846 | 1669449 | - | CsaV3_6G002420.1 | Csa06g00242 | 531869 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00242 | 265 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 43 | 265 | - | - | |
Csa06g00242 | 265 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 140 | 148 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
Csa06g00242 | 265 | Gene3D | - | 169 | 265 | IPR014717 | - | |
Csa06g00242 | 265 | MobiDBLite | consensus disorder prediction | 134 | 149 | - | - | |
Csa06g00242 | 265 | MobiDBLite | consensus disorder prediction | 17 | 31 | - | - | |
Csa06g00242 | 265 | CDD | EF1B | 174 | 265 | IPR014038 | GO:0003746|GO:0006414 | |
Csa06g00242 | 265 | PANTHER | ELONGATION FACTOR 1-DELTA 1-RELATED | 43 | 265 | - | - | |
Csa06g00242 | 265 | MobiDBLite | consensus disorder prediction | 127 | 155 | - | - | |
Csa06g00242 | 265 | SMART | EF1_GNE_2 | 176 | 265 | IPR014038 | GO:0003746|GO:0006414 | |
Csa06g00242 | 265 | SUPERFAMILY | eEF-1beta-like | 173 | 265 | IPR036219 | - | |
Csa06g00242 | 265 | SUPERFAMILY | GST C-terminal domain-like | 50 | 111 | IPR036282 | - | |
Csa06g00242 | 265 | Gene3D | - | 29 | 117 | - | - | |
Csa06g00242 | 265 | Coils | Coil | 148 | 168 | - | - | |
Csa06g00242 | 265 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 254 | 265 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
Csa06g00242 | 265 | MobiDBLite | consensus disorder prediction | 17 | 37 | - | - | |
Csa06g00242 | 265 | Pfam | EF-1 guanine nucleotide exchange domain | 178 | 265 | IPR014038 | GO:0003746|GO:0006414 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00958 | Csa-Chr1:5938320 | Csa06g00242 | Csa-Chr6:1666846 | 2.36E-115 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00242 | K03232 | - | csv:101215827 | 441.039 |