Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00256 ATGGATACCAAAGGTCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTTGTTCTCATCAATGCCGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGCTGAGTGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGCGCCTTTCCAGTTTGTAGACCTTGCTATGAGTATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGTAGTCCTCGGGTTGAAGGCGATGAAGAAGAAGATGATATTGATGATCTTGAGAATGAATTTGACATTGCAAACAAGGATCCTAACAGTGCATCTGAGGCAATGCTCTATCCTCACCTTGCCGTTGGGCGTGGTTCTCATGCTAATGGTTCTGGAAATATGGCTTCCGACCTGGACTCCTCCTCTGTCCCAACTGATATACCTCTTCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATTATTCCTCCTTTTATTAGCCGTGGGAAAAAGGTCCATCCGGTGCCGTTCACTGATTCTTCCATGTCTGCCAATCCAAGGCCAATGGATCCCAAAAAGGATTTAGCTGTGTATGGGTATGGAACTGTTGCGTGGAAGGAAAGAATGGAAGACTGGCGGAAGAAGCAAAATGAAAGACTTCAAGTAATTAAGCATGAGGGTGGTGGTGGAAAAGGTGACGATGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGACAACCACTCTCCAGAAAACTGCCTATCCCCTCAAGCAAGATAAACCCGTACAGAATGATAATCGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTATTCTTCATCCTGTCCATGAGGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATTTGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTTCGAGAAACTTACCTTGATCGGTTATCGTTAAGGTACGAAAAAGATGGCAAGCCATCAGAATTGGCTTCGATAGACGTTTATGTGAGTACAGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCAAACACTGTCCTTTCTATTCTCGCTGTCGATTATCCTGTAGACAAGGTTTCGTGCTATGTTTCTGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCGGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGGGCCCCAGAATGGTATTTTGCCCAGAAGGTCGACTATTTGAAAGACAAAGTTGATCCAACATTTGTCAGGGAACGACGTGCAATGAAGAGAGACTATGAAGAATTTAAAGTTCGTATCAATGGGCTTGTTGCTATGGCTCAAAAAGTTCCTGAAGATGGGTGGACGATGCAGGATGGAACTCCATGGCCCGGGAATAACGTTCGGGATCATCCTGGAATGATTCAGGTATTCCTTGGTCAAAACGGTGTTCGTGACTTGGAGGGAAATGAATTACCTCGTCTAGTGTATGTATCTCGTGAGAAGAGGCCAGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATGCTTTGGTGCGTGTCTCGGCAATTATCTCAAATGCTCCATACATTTTGAACGTCGATTGTGATCACTACATCAACAACAGCAAGGCTCTTAGAGAAGCAATGTGCTTCATGATGGACCCAATTTCAGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCACGATCGATACTCAAATCGAAATGTTGTATTCTTTGATATTAACATGAAAGGATTGGACGGTATTCAAGGGCCAATATACGTTGGAACTGGATGTGTCTTTAGGAGGCAAGCTCTTTATGGGTATGATGCCCCTGCTAAGAAGAAAGCACCAAGAAGGACATGCAACTGTCTTCCAAAATGGTGCTGCTGTTGCTGTGGAACTAGAAAGAAGACTAAAACAAAGACCAGTGATAAAAAGAAATTAAAGACCAAAGATACGTCCAAACAGATTCACGCACTTGAAAATATTGAAGAAGGAATCGAAGGAATAGATAATGAAAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCACCAGCATTCATTGCTTCCACACTCATGGAAGATGGTGGCGTGCCAGGAGGAGGGACTTCTGCTTCATTGTTGAAAGAAGCCATACATGTAATCAGTTGTGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTTGGGTGGATTTATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGTCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGGCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTCTACACCAAGTTCTTCGGTGGGCTCTTGGGTCTGTTGAAATTCTGTTGAGTAGGCATTGTCCAATATGGTACGGCTATGGATGTGGTTTGAAGTGGCTTGAGCGTTTCTCATACATAAACTCCGTTGTGTATCCATTGACGTCAGTTCCACTGATTGCTTATTGTACGCTGCCAGCTGTCTGCCTGCTTACAGGGCAGTTTATTGTACCCGAGCTTAGCAACTATGCCAGTATTATTTTCATGGCACTTTTCATCTCTATAGCAGCGACGGGTATCCTAGAAATGCAGTGGGGAGGTGTAGGGATCCATGATTGGTGGAGAAACGAGCAGTTCTGGGTTATTGGTGGTGCTTCGTCTCATCTTTTTGCACTTTTCCAGGGTCTGCTAAAGGTGTTGGCTGGTGTTAACACAAATTTCACTGTCACATCCAAAGGAGGAGATGATGGGGATTTTGCCGAGCTTTACCTCTTCAAATGGACATCATTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATTATCGGAGTAGTTGTCGGAATTTCAGATGCCATCAACAATGGTTACGACTCATGGGGTCCACTCATTGGTAAGCTGTTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACTATTATCATTGTGTGGTCAATCCTTCTATCATCCATTTTGTCGCTTTTATGGGTCCGAATCAACCCCTTCCTCGACAAGGGTGGCATTGTGTTGGAAGTTTGCGGGTTAAACTGTGACGACTAA 3273 43.9 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNSASEAMLYPHLAVGRGSHANGSGNMASDLDSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPVPFTDSSMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDELDDTDLPMMDEGRQPLSRKLPIPSSKINPYRMIIVLRIVILCLFFHYRILHPVHEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDVYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRKKTKTKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRAAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGDFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD* 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1749753 1757224 - CsaV3_6G002560.1 Csa06g00256 531883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00256 1090 SUPERFAMILY Nucleotide-diphospho-sugar transferases 377 872 IPR029044 -
Csa06g00256 1090 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Csa06g00256 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Csa06g00256 1090 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Csa06g00256 1090 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Csa06g00256 1090 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 509 655 IPR029044 -
Csa06g00256 1090 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1088 - -
Csa06g00256 1090 Pfam Cellulose synthase 363 1077 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa06g00256 1090 PANTHER CELLULOSE SYNTHASE 1 1088 - -
Csa06g00256 1090 SUPERFAMILY RING/U-box 28 107 - -
Csa06g00256 1090 Coils Coil 99 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00256 Csa-Chr6:1749753 Csa06g02816 Csa-Chr6:24583973 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00256 K10999 - csv:101214061 2128.98