Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00273 | ATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGCGACTGCAGGATCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAATGGTACTAAGTGTAATCTACACTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCTGTACTCTATAATCGTCATGGAGGAACTTGA | 558 | 44.09 | MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT* | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1942784 | 1948645 | - | CsaV3_6G002730.1 | Csa06g00273 | 531900 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00273 | 185 | ProSiteProfiles | Zinc finger RING-type profile. | 10 | 53 | IPR001841 | - | |
Csa06g00273 | 185 | PANTHER | UNCHARACTERIZED | 3 | 184 | IPR038896 | GO:0061630 | |
Csa06g00273 | 185 | PANTHER | BNAC07G13660D PROTEIN | 3 | 184 | - | - | |
Csa06g00273 | 185 | SMART | ring_2 | 10 | 52 | IPR001841 | - | |
Csa06g00273 | 185 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 113 | IPR013083 | - | |
Csa06g00273 | 185 | Pfam | Protein of unknown function (DUF1232) | 130 | 164 | IPR010652 | - | |
Csa06g00273 | 185 | ProSitePatterns | Zinc finger RING-type signature. | 25 | 34 | IPR017907 | - | |
Csa06g00273 | 185 | SUPERFAMILY | RING/U-box | 8 | 59 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00273 | K15707 | - | cmo:103501307 | 361.303 |