Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00273 ATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGCGACTGCAGGATCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAATGGTACTAAGTGTAATCTACACTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCTGTACTCTATAATCGTCATGGAGGAACTTGA 558 44.09 MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1942784 1948645 - CsaV3_6G002730.1 Csa06g00273 531900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00273 185 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
Csa06g00273 185 PANTHER UNCHARACTERIZED 3 184 IPR038896 GO:0061630
Csa06g00273 185 PANTHER BNAC07G13660D PROTEIN 3 184 - -
Csa06g00273 185 SMART ring_2 10 52 IPR001841 -
Csa06g00273 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 113 IPR013083 -
Csa06g00273 185 Pfam Protein of unknown function (DUF1232) 130 164 IPR010652 -
Csa06g00273 185 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Csa06g00273 185 SUPERFAMILY RING/U-box 8 59 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00273 K15707 - cmo:103501307 361.303