Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00274 ATGGCCGCTCTTCACCAAACCACCGCCTCTCTTCAGGCCAAGCTCCTTCCAACCGCTCGAATCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCTCGCGGACTCCGCCTCGTCCAGCACCGCTCTCACGGCGGCGCAAGAATGTCGGCCACAGCCGCCGGAAGCTACGCTGCAGCACTAGCCGAAGTGGCAGCGTCGAACAACACACTTGACGCCACAAGCAGCGACGTGGAGAAGATCGAGAGCGTGTTTGCGGATCAACGGGTGTTCGATTTCTTCGCGAATCCTACGATTAGCGTGGAGAAGAAACAAGCAGTGGTGGATGAAATGGCTTCTTCGTCATCTCTACAGCCGCATTCAGCAAATTTCTTGAAGATCTTGGTGGATGCGAAGAGAATCGACATCCTGAAGGAGATAGTTACGGAGTTTGAATTGGTGTATAACAAGATAACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAATTGGAGCAGCAACATTTGGCGCAAATCGCGAAACAGGTGCAGAAATTGAGTGGCGCGAAGAATGTGAGGATAAAGACGCAGATTGATCCAAGTTTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCCAAACTCATTGATTTGAGTGTTAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA 723 51.04 MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV* 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1950311 1952397 - CsaV3_6G002740.1 Csa06g00274 531901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00274 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 157 IPR026015 -
Csa06g00274 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986|GO:0016020|GO:0046933
Csa06g00274 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986|GO:0046933
Csa06g00274 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986|GO:0046933
Csa06g00274 240 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 58 231 IPR000711 GO:0015986|GO:0046933
Csa06g00274 240 Gene3D - 57 149 IPR026015 -
Csa06g00274 240 PANTHER ATP SYNTHASE DELTA CHAIN 47 239 IPR000711 GO:0015986|GO:0046933
Csa06g00274 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986|GO:0046933
Csa06g00274 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986|GO:0046933
Csa06g00274 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986|GO:0046933
Csa06g00274 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986|GO:0046933
Csa06g00274 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986|GO:0046933
Csa06g00274 240 PANTHER BNACNNG66500D PROTEIN 47 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00274 Csa-Chr6:1950311 Csa03g00784 Csa-Chr3:6826585 2.29E-20 dispersed
Csa06g00274 Csa-Chr6:1950311 Csa07g02019 Csa-Chr7:19694106 2.71E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00274 K02113 - csv:101211740 424.091