Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00289 ATGGAGATGGAGCAGTACAAGGTTTTGGCTCTGGGTTTCGTCTCTTTGATCTTGTTGGTTCGTCCACTATGGCTCGTTTCTGCCAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAAGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTCAATCCCTGTACATGGTTTCATGTTACATGCAATAACGATAACAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTGTCGGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCAAGTGATCTGGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAATAGATTTTCGGGTCCAATTCCAGACACATTGGGCAAGCTGTCAAAACTCCGGTTCCTCCGGCTGAACAACAACAGCTTAGCAGGCCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTTCTGGATCTATCGAATAACCATCTCTCCGGCGTGGTTCCAGATAATGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGTCCTGTTACTGGCCGCCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCATTTGTCCCACCGCCACCTATATCTTCACCAGGAGGGAATAGTGCGACTGGAGCTATTGCTGGTGGAGTTGCTGCGGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCGTTTGCGTGGTGGCGCCGTAGGAAACCCCAAGAAGTTTTCTTCGATGTTCCTGCCGAGGAGGATCCAGAGGTGCATTTGGGACAGCTTAAAAGATTTTCGCTGAGAGAGCTACAAGTGGCAACCGATAGTTTTAGTAACAAAAACATACTCGGGAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGATGGTTCTTTAGTAGCTGTTAAAAGACTTAAGGAAGAACGTACGCCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTACTACGACTACGTGGATTTTGCATGACACCAACTGAACGTCTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTGGCATCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACAAGAAAGCGAATTGCATTGGGATCTGCAAGAGGGCTGTCTTATTTGCACGATCACTGTGATCCAAAGATCATTCATCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCTAAACTTATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCTGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTATGGTATCATGCTGTTAGAGCTTATCACTGGTCAAAGGGCTTTCGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTATTGAAAGAGAAGAAGCTAGAAATGCTGGTTGACCCTGATCTTCAGAATAATTATATAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCCTTACTCTGCACACAAGGCTCCCCAATGGACCGACCAAAGATGTCCGAGGTGGTAAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAATCCTTCGGCAAGAAATCGATCTATCGCCCCATCCAAATTCCGATTGGATTGTCGATTCAACTGAAAATCTGCATGCAGTTGAGCTTTCTGGTCCAAGATGA 1884 45.28 MEMEQYKVLALGFVSLILLVRPLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPSDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLAGPIPMSLTNISSLQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYIESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR* 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2107583 2116734 - CsaV3_6G002890.1 Csa06g00289 531916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00289 627 SUPERFAMILY L domain-like 32 195 - -
Csa06g00289 627 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 12 627 IPR031048 GO:0004675|GO:0005102|GO:0006468
Csa06g00289 627 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Csa06g00289 627 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Csa06g00289 627 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Csa06g00289 627 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Csa06g00289 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 627 - -
Csa06g00289 627 ProSiteProfiles Protein kinase domain profile. 304 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00289 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Csa06g00289 627 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Csa06g00289 627 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Csa06g00289 627 SMART serkin_6 304 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00289 627 Pfam Protein kinase domain 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00289 627 Pfam Leucine Rich Repeat 168 185 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00492 Csa-Chr4:3226997 Csa06g00289 Csa-Chr6:2107583 0 dispersed
Csa04g00493 Csa-Chr4:3228816 Csa06g00289 Csa-Chr6:2107583 5.40E-64 dispersed
Csa04g00931 Csa-Chr4:6948285 Csa06g00289 Csa-Chr6:2107583 0 dispersed
Csa06g00289 Csa-Chr6:2107583 Csa07g00530 Csa-Chr7:3883580 0 dispersed
Csa06g03712 Csa-Chr6:29681231 Csa06g00289 Csa-Chr6:2107583 1.30E-180 dispersed
Csa07g00694 Csa-Chr7:4974916 Csa06g00289 Csa-Chr6:2107583 3.14E-71 dispersed
Csa06g00289 Csa-Chr6:2107583 Csa05g02551 Csa-Chr5:26917973 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78315 PF00069 Pkinase 9.20E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00289 K13418 - csv:101208695 1160.98