Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00324 ATGAACATCGCTACTCTTGTTTTCTGGATCATCCAGATATCCATCCATGGAGTTGGAGTCTTTTCTAAAACGAAAGCACCAGACGTTTCTGCATTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGAAATTCTTGGGAAGGGATTCAATGCTCAGGATCATCCGTCACTGAAATAAGTTTATCAGATTTTGGACTGAGTGGATCAATGGGTTACCAGCTTTCAAATTTGGCATCTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGTGAGATTCCCTACCAACTTCCCCCTAATGCAGTTCACATTGATCTTTCTGGGAACAGTTTCACTGGTAGTGTGCCTTATTCAATATCTCAGATGAGTGAACTTGAATTTCTAAATCTTGGTCATAACAAGCTTAGCAATCAACTGAGTGATATGTTTGGCAAGCTGGCTAAACTCAAAAGGCTGGATCTGTCCTTCAACTCAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACAGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATTTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACTGGATGGATTCCTGAAAGTCTTGAAGATATAGATAACTTGGAAACTGTAGGAAATTCTTGGTCAACTGGACCAGCACCCCCTCCACCACCAGGGACGGTATCTCCGACGAACAAGAAATCAAACAAGGAGGAGTCGAACAAGATCAGTTCGGCAGTGAAAAGTGGGTTAGTGATAGCAGGAATAGCAATGGGAGTATTAGCAGTAATAGCAATAGTGATTGGAATGACAACAAAAAGGAGGAGGCATGTATCTCATTATCTTGATGAAGACACAAATCAACACAGATCATTCACTCCACTCACTTCCCAAGAACTCGCAAAGGGTAATGATAATAATGGGATTGATAGAAAATCCTTCACTTCAGATGCTTCTGTTGACATAAAAGGTGGTGTGGTTAGACCACCACCAGCTCCTTTAGATTCTATTCGGTCCTTCAGTGATAATCAGTTTGCAAGCCGTCTGAATTCGAAGAGGAGAAGCACTTCGTTTCGTGCAATTTCTTATTCATTGGTTGATTTGCAAACTGCCACTGCTAATTTTTCTCCTTCTCGACTTCTTGGTGAGGGTACTATTGGACGTGTTTATAAGGCCAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCAACAGTTTTTCAAGGGAGGAGAACCGAGGAGTTCAGTGAAGTAGTAGCAATAATTTCAAAGCTTAATCACACAAACATAGCAGAAGTGGTTGGATTTTGTTCAGAGCAGGGACATCATTTGTTCATTTATGAATTTTTCACGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTCAGTAAACCACTCACTTGGAACACCAGAGTCAGAATTGCTTTGGGGACAGCAAGAGCTCTTGAGTATCTTCACGAAGTTTGCTCGCCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCCGAACTTAATCCTCGTCTCTCAGACTACGGTTTGGCAACATTTTATAAGAGTAGAAGGCAAAACCCTGAAGGTGGATATGATGCTCCAGAATGCAGTACAAAGGGTTCAAGTTATACTATGAAGAGTGACATTCACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACGGGCAGGATGCCTTTTGACTCGAGTAAGGCAAAAGTGGAACAATGTCTAGTGAGATGGGCAACGCCACAACTGCATGACATAGATGCATTGGACAAAATGGTGGATCCTGCACTGAGAGGCTTATATCCACCAAAGTCGGTGTCTAGATTTGCAGATATAATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCAATGTCCGAAGTGGTTCAAGCCTTGGTCACTTTGGTTCAACGTTCCAGTATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2091 40.84 MNIATLVFWIIQISIHGVGVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGNSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLASVTYFDLSKNNLNGEIPYQLPPNAVHIDLSGNSFTGSVPYSISQMSELEFLNLGHNKLSNQLSDMFGKLAKLKRLDLSFNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINFLADLPLDDLNVANNKFTGWIPESLEDIDNLETVGNSWSTGPAPPPPPGTVSPTNKKSNKEESNKISSAVKSGLVIAGIAMGVLAVIAIVIGMTTKRRRHVSHYLDEDTNQHRSFTPLTSQELAKGNDNNGIDRKSFTSDASVDIKGGVVRPPPAPLDSIRSFSDNQFASRLNSKRRSTSFRAISYSLVDLQTATANFSPSRLLGEGTIGRVYKAKYGDGKVLAVKKIDSTVFQGRRTEEFSEVVAIISKLNHTNIAEVVGFCSEQGHHLFIYEFFTNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKSRRQNPEGGYDAPECSTKGSSYTMKSDIHSLGVVMLELLTGRMPFDSSKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2405503 2410473 - CsaV3_6G003240.1 Csa06g00324 531951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00324 696 Gene3D Phosphorylase Kinase; domain 1 364 478 - -
Csa06g00324 696 SUPERFAMILY L domain-like 27 236 - -
Csa06g00324 696 Pfam Protein kinase domain 404 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00324 696 ProSiteProfiles Protein kinase domain profile. 401 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00324 696 MobiDBLite consensus disorder prediction 236 267 - -
Csa06g00324 696 SUPERFAMILY Protein kinase-like (PK-like) 383 670 IPR011009 -
Csa06g00324 696 Gene3D Ribonuclease Inhibitor 25 277 IPR032675 -
Csa06g00324 696 Gene3D Transferase(Phosphotransferase) domain 1 479 693 - -
Csa06g00324 696 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515
Csa06g00324 696 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Csa06g00324 696 PANTHER OS01G0253100 PROTEIN 19 692 IPR045271 GO:0004714|GO:0006468
Csa06g00324 696 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 19 692 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03592 Csa-Chr3:32042056 Csa06g00324 Csa-Chr6:2405503 5.31E-153 dispersed
Csa03g03593 Csa-Chr3:32048441 Csa06g00324 Csa-Chr6:2405503 4.30E-122 dispersed
Csa06g00324 Csa-Chr6:2405503 Csa07g02300 Csa-Chr7:21374921 0 dispersed
Csa06g00324 Csa-Chr6:2405503 Csa03g02807 Csa-Chr3:26882602 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78316 PF00069 Pkinase 8.20E-41 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00324 - - csv:101209107 1369.37