Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00324 ATGAACATCGCTACTCTTGTTTTCTGGATCATCCAGATATCCATCCATGGAGTTGGAGTCTTTTCTAAAACGAAAGCACCAGACGTTTCTGCATTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGAAATTCTTGGGAAGGGATTCAATGCTCAGGATCATCCGTCACTGAAATAAGTTTATCAGATTTTGGACTGAGTGGATCAATGGGTTACCAGCTTTCAAATTTGGCATCTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGTGAGATTCCCTACCAACTTCCCCCTAATGCAGTTCACATTGATCTTTCTGGGAACAGTTTCACTGGTAGTGTGCCTTATTCAATATCTCAGATGAGTGAACTTGAATTTCTAAATCTTGGTCATAACAAGCTTAGCAATCAACTGAGTGATATGTTTGGCAAGCTGGCTAAACTCAAAAGGCTGGATCTGTCCTTCAACTCAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACAGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATTTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACTGGATGGATTCCTGAAAGTCTTGAAGATATAGATAACTTGGAAACTGTAGGAAATTCTTGGTCAACTGGACCAGCACCCCCTCCACCACCAGGGACGGTATCTCCGACGAACAAGAAATCAAACAAGGAGGAGTCGAACAAGATCAGTTCGGCAGTGAAAAGTGGGTTAGTGATAGCAGGAATAGCAATGGGAGTATTAGCAGTAATAGCAATAGTGATTGGAATGACAACAAAAAGGAGGAGGCATGTATCTCATTATCTTGATGAAGACACAAATCAACACAGATCATTCACTCCACTCACTTCCCAAGAACTCGCAAAGGGTAATGATAATAATGGGATTGATAGAAAATCCTTCACTTCAGATGCTTCTGTTGACATAAAAGGTGGTGTGGTTAGACCACCACCAGCTCCTTTAGATTCTATTCGGTCCTTCAGTGATAATCAGTTTGCAAGCCGTCTGAATTCGAAGAGGAGAAGCACTTCGTTTCGTGCAATTTCTTATTCATTGGTTGATTTGCAAACTGCCACTGCTAATTTTTCTCCTTCTCGACTTCTTGGTGAGGGTACTATTGGACGTGTTTATAAGGCCAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCAACAGTTTTTCAAGGGAGGAGAACCGAGGAGTTCAGTGAAGTAGTAGCAATAATTTCAAAGCTTAATCACACAAACATAGCAGAAGTGGTTGGATTTTGTTCAGAGCAGGGACATCATTTGTTCATTTATGAATTTTTCACGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTCAGTAAACCACTCACTTGGAACACCAGAGTCAGAATTGCTTTGGGGACAGCAAGAGCTCTTGAGTATCTTCACGAAGTTTGCTCGCCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCCGAACTTAATCCTCGTCTCTCAGACTACGGTTTGGCAACATTTTATAAGAGTAGAAGGCAAAACCCTGAAGGTGGATATGATGCTCCAGAATGCAGTACAAAGGGTTCAAGTTATACTATGAAGAGTGACATTCACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACGGGCAGGATGCCTTTTGACTCGAGTAAGGCAAAAGTGGAACAATGTCTAGTGAGATGGGCAACGCCACAACTGCATGACATAGATGCATTGGACAAAATGGTGGATCCTGCACTGAGAGGCTTATATCCACCAAAGTCGGTGTCTAGATTTGCAGATATAATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCAATGTCCGAAGTGGTTCAAGCCTTGGTCACTTTGGTTCAACGTTCCAGTATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2091 40.84 MNIATLVFWIIQISIHGVGVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGNSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLASVTYFDLSKNNLNGEIPYQLPPNAVHIDLSGNSFTGSVPYSISQMSELEFLNLGHNKLSNQLSDMFGKLAKLKRLDLSFNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINFLADLPLDDLNVANNKFTGWIPESLEDIDNLETVGNSWSTGPAPPPPPGTVSPTNKKSNKEESNKISSAVKSGLVIAGIAMGVLAVIAIVIGMTTKRRRHVSHYLDEDTNQHRSFTPLTSQELAKGNDNNGIDRKSFTSDASVDIKGGVVRPPPAPLDSIRSFSDNQFASRLNSKRRSTSFRAISYSLVDLQTATANFSPSRLLGEGTIGRVYKAKYGDGKVLAVKKIDSTVFQGRRTEEFSEVVAIISKLNHTNIAEVVGFCSEQGHHLFIYEFFTNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKSRRQNPEGGYDAPECSTKGSSYTMKSDIHSLGVVMLELLTGRMPFDSSKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2405503 2410473 - CsaV3_6G003240.1 Csa06g00324 531951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00324 696 Gene3D Phosphorylase Kinase; domain 1 364 478 - -
Csa06g00324 696 SUPERFAMILY L domain-like 27 236 - -
Csa06g00324 696 Pfam Protein kinase domain 404 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00324 696 ProSiteProfiles Protein kinase domain profile. 401 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00324 696 MobiDBLite consensus disorder prediction 236 267 - -
Csa06g00324 696 SUPERFAMILY Protein kinase-like (PK-like) 383 670 IPR011009 -
Csa06g00324 696 Gene3D Ribonuclease Inhibitor 25 277 IPR032675 -
Csa06g00324 696 Gene3D Transferase(Phosphotransferase) domain 1 479 693 - -
Csa06g00324 696 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515
Csa06g00324 696 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Csa06g00324 696 PANTHER OS01G0253100 PROTEIN 19 692 IPR045271 GO:0004714|GO:0006468
Csa06g00324 696 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 19 692 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00324 - - - csv:101209107 1369.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03592 Csa-Chr3:32042056 Csa06g00324 Csa-Chr6:2405503 5.31E-153 dispersed
Csa03g03593 Csa-Chr3:32048441 Csa06g00324 Csa-Chr6:2405503 4.30E-122 dispersed
Csa06g00324 Csa-Chr6:2405503 Csa07g02300 Csa-Chr7:21374921 0 dispersed
Csa06g00324 Csa-Chr6:2405503 Csa03g02807 Csa-Chr3:26882602 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g00420 . 31 790 Strubbelig Receptor Gene Family AT4G03390 62.3 4.6e-208 721.5
Csa06g03601 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.4 1.0e-159 560.8
Csa07g02300 CCT 382 689 Strubbelig Receptor Gene Family AT4G03390 56.2 1.1e-89 328.2
Csa03g03592 . 17 736 Strubbelig Receptor Gene Family AT5G06820 53.3 7.0e-182 634.4
Csa03g03593 . 18 704 Strubbelig Receptor Gene Family AT5G06820 50.7 8.6e-164 574.3
Csa06g00324 . 22 697 Strubbelig Receptor Gene Family AT1G78980 60.6 1.7e-193 672.9
Csa03g02807 CCT 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Csa07g02300 CCT 24 692 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-125 446.4
Csa06g00324 . 20 674 Strubbelig Receptor Gene Family AT3G13065 51.2 5.1e-142 501.9
Csa01g03495 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Csa03g03592 . 17 736 Strubbelig Receptor Gene Family AT5G06820 53.3 7.0e-182 634.4
Csa03g03593 . 18 704 Strubbelig Receptor Gene Family AT5G06820 50.7 8.6e-164 574.3
Csa07g00420 . 31 790 Strubbelig Receptor Gene Family AT4G03390 62.3 4.6e-208 721.5
Csa06g03601 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.4 1.0e-159 560.8
Csa07g02300 CCT 382 689 Strubbelig Receptor Gene Family AT4G03390 56.2 1.1e-89 328.2
Csa06g00324 . 20 674 Strubbelig Receptor Gene Family AT3G13065 51.2 5.1e-142 501.9
Csa06g00324 . 22 697 Strubbelig Receptor Gene Family AT1G78980 60.6 1.7e-193 672.9
Csa03g02807 CCT 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Csa07g02300 CCT 24 692 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-125 446.4
Csa03g02807 CCT 1 719 Strubbelig Receptor Gene Family AT1G53730 59.7 1.0e-214 743.4
Csa07g02300 CCT 1 714 Strubbelig Receptor Gene Family AT1G53730 59.7 1.1e-184 643.7
Csa06g00324 . 15 682 Strubbelig Receptor Gene Family AT1G53730 52.0 4.0e-158 555.4
Csa03g02807 CCT 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 1.2e-188 656.8
Csa07g02300 CCT 6 704 Strubbelig Receptor Gene Family AT3G14350 56.0 5.7e-170 594.7
Csa04g00359 . 21 203 Strubbelig Receptor Gene Family AT3G14350 51.1 2.0e-42 171.0
Csa01g03495 . 138 712 Strubbelig Receptor Gene Family AT4G22130 61.3 1.5e-184 642.9
Csa03g02807 CCT 398 726 Strubbelig Receptor Gene Family AT4G22130 63.1 1.2e-120 430.6
Csa07g02300 CCT 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Csa07g00420 . 458 782 Strubbelig Receptor Gene Family AT4G22130 58.0 3.3e-107 386.0
Csa06g03601 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.8 5.1e-100 362.1
Csa06g00324 . 386 696 Strubbelig Receptor Gene Family AT4G22130 55.9 2.8e-98 356.3
Csa03g03592 . 387 702 Strubbelig Receptor Gene Family AT4G22130 50.6 9.4e-86 314.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78316 PF00069 Pkinase 8.20E-41 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00324 Csa_Chr06 FPKM 1.110801 0.875758 1.529234 1.487629 6.201949 5.405016 6.094367 2.187149 1.596712 2.142004