Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00332 ATGCTTTACTCCGACAAAATGCAACAAATTGCAGCCAAAATGGGTTTCACACTCTCCGATTTCGCCGACACTTTGGAACAAGAACGCCGCAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCACCTTGTTTCCCATGCCATTGATTGTTGTAGGCAGCAGCTATCGGGGACGACTACGGAGAATCGTCAATCCGAGTGTTCTGAGCAGACTTCCAGTGATATGGGTCCGGTTCTTGAGGAATTTATTCCCATTAACAGAAATGGGGTTTCCGATTTTGAAAAAACGGAGAAGAATAACAAAAACCATGACTCTGATTTAAATAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCTTGAATCAGGACCTGCCAGAGAACACGCCGGTCGTTGAGGTCAATAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTGGCGGCGGTGGCGGGGGAGGGGCATCGTCGTCTTCACCTCCGGCTCCGGCTGCGGAAACGAGCTCCACGACGGAAACGGGTTCAGGGGGAAGTAGTCGGCGGGAAGAGAAGGAAGCGCAGAATCAGAGGAAACAGAGACGTTGCTGGTCGCCGGAGCTTCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGGTCCCATGTGGCGACGCCGAAGCAAATAAGAGAATTGATGAAGGTGGATGGTCTCACCAACGATGAAGTGAAAAGTCACCTGCAGAAGTATCGTCTGCACACGAGACGACCAACTCCGACGATCCACAACAACGAGGGCGGCCATGCACCGCAGTTCCTAGTTGTTGGCGGCATATGGGTACCTGCAGCCGAGTACGCCGCTGTGTCCACCACCACTTCATCTGGAGAAGTGGTCAGTGCCGCTACCACCAACGGAATTTATGCACCGGTTGTGGCAGCTGCAGCGCCGCAGCCATTAGTTAGTACAGTTCAAAAGCCCAAGCCCAAGCCCAAGCCCAAGATTATTCCTTCCTCCGCCGTGGAATGTAATTCTCCGACTACATCTTCGTCTACTCATACGTCGTCAGTTTCACCAGCTTCTTCTTGA 1116 52.51 MLYSDKMQQIAAKMGFTLSDFADTLEQERRKVLMFQRELPLCLHLVSHAIDCCRQQLSGTTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEKTEKNNKNHDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDLPENTPVVEVNRNGGAFRPFQKEKTGGGGGGGGASSSSPPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTTSSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTHTSSVSPASS* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2554114 2557358 + CsaV3_6G003320.1 Csa06g00332 531959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00332 371 MobiDBLite consensus disorder prediction 126 212 - -
Csa06g00332 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 365 IPR044787 GO:0003700|GO:0006355
Csa06g00332 371 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Csa06g00332 371 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Csa06g00332 371 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Csa06g00332 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Csa06g00332 371 PANTHER TRANSCRIPTION FACTOR HHO2 18 365 - -
Csa06g00332 371 Coils Coil 95 115 - -
Csa06g00332 371 MobiDBLite consensus disorder prediction 194 212 - -
Csa06g00332 371 MobiDBLite consensus disorder prediction 349 371 - -
Csa06g00332 371 MobiDBLite consensus disorder prediction 329 371 - -
Csa06g00332 371 MobiDBLite consensus disorder prediction 177 193 - -
Csa06g00332 371 Gene3D - 207 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00332 - - - csv:101210056 616.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00332 Csa-Chr6:2554114 Csa06g02919 Csa-Chr6:25313747 1.81E-42 dispersed
Csa05g02583 Csa-Chr5:27140404 Csa06g00332 Csa-Chr6:2554114 6.69E-99 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa03g01797 . 241 399 G2-like Transcription Factor Family AT5G16560 61.5 3.9e-41 166.0
Csa03g04154 CCT 1 161 G2-like Transcription Factor Family AT5G42630 59.0 1.9e-37 152.9
Csa06g00332 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 3.7e-51 198.7
Csa05g02583 . 19 258 G2-like Transcription Factor Family AT1G25550 52.0 3.5e-49 192.2
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT5G05090 56.2 6.6e-74 274.2
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT5G05090 54.7 1.5e-70 263.1
Csa03g01095 . 12 298 G2-like Transcription Factor Family AT4G13640 51.7 6.5e-54 208.0
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa02g00846 . 3 252 G2-like Transcription Factor Family AT1G69580 50.9 2.0e-51 199.9
Csa07g01218 CCT 1 382 G2-like Transcription Factor Family AT1G79430 54.2 3.2e-87 318.9
Csa06g01145 CCT 1 364 G2-like Transcription Factor Family AT1G79430 51.5 1.5e-76 283.5
Csa03g01095 . 39 198 G2-like Transcription Factor Family AT1G79430 63.0 3.2e-39 159.5
Csa06g03415 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 8.3e-52 200.7
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT3G10760 62.2 2.9e-90 328.9
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT3G10760 59.1 8.9e-84 307.4
Csa04g01908 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 1.3e-60 229.9
Csa03g03685 . 1 199 G2-like Transcription Factor Family AT2G40970 60.0 1.3e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31906 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00332 Csa_Chr06 FPKM 0.0 0.271869 0.0 0.0 0.152915 0.40988 0.465036 0.0 0.109631 0.0