Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00332 ATGCTTTACTCCGACAAAATGCAACAAATTGCAGCCAAAATGGGTTTCACACTCTCCGATTTCGCCGACACTTTGGAACAAGAACGCCGCAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCACCTTGTTTCCCATGCCATTGATTGTTGTAGGCAGCAGCTATCGGGGACGACTACGGAGAATCGTCAATCCGAGTGTTCTGAGCAGACTTCCAGTGATATGGGTCCGGTTCTTGAGGAATTTATTCCCATTAACAGAAATGGGGTTTCCGATTTTGAAAAAACGGAGAAGAATAACAAAAACCATGACTCTGATTTAAATAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCTTGAATCAGGACCTGCCAGAGAACACGCCGGTCGTTGAGGTCAATAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTGGCGGCGGTGGCGGGGGAGGGGCATCGTCGTCTTCACCTCCGGCTCCGGCTGCGGAAACGAGCTCCACGACGGAAACGGGTTCAGGGGGAAGTAGTCGGCGGGAAGAGAAGGAAGCGCAGAATCAGAGGAAACAGAGACGTTGCTGGTCGCCGGAGCTTCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGGTCCCATGTGGCGACGCCGAAGCAAATAAGAGAATTGATGAAGGTGGATGGTCTCACCAACGATGAAGTGAAAAGTCACCTGCAGAAGTATCGTCTGCACACGAGACGACCAACTCCGACGATCCACAACAACGAGGGCGGCCATGCACCGCAGTTCCTAGTTGTTGGCGGCATATGGGTACCTGCAGCCGAGTACGCCGCTGTGTCCACCACCACTTCATCTGGAGAAGTGGTCAGTGCCGCTACCACCAACGGAATTTATGCACCGGTTGTGGCAGCTGCAGCGCCGCAGCCATTAGTTAGTACAGTTCAAAAGCCCAAGCCCAAGCCCAAGCCCAAGATTATTCCTTCCTCCGCCGTGGAATGTAATTCTCCGACTACATCTTCGTCTACTCATACGTCGTCAGTTTCACCAGCTTCTTCTTGA 1116 52.51 MLYSDKMQQIAAKMGFTLSDFADTLEQERRKVLMFQRELPLCLHLVSHAIDCCRQQLSGTTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEKTEKNNKNHDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDLPENTPVVEVNRNGGAFRPFQKEKTGGGGGGGGASSSSPPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTTSSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTHTSSVSPASS* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2554114 2557358 + CsaV3_6G003320.1 Csa06g00332 531959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00332 371 MobiDBLite consensus disorder prediction 126 212 - -
Csa06g00332 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 365 IPR044787 GO:0003700|GO:0006355
Csa06g00332 371 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Csa06g00332 371 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Csa06g00332 371 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Csa06g00332 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Csa06g00332 371 PANTHER TRANSCRIPTION FACTOR HHO2 18 365 - -
Csa06g00332 371 Coils Coil 95 115 - -
Csa06g00332 371 MobiDBLite consensus disorder prediction 194 212 - -
Csa06g00332 371 MobiDBLite consensus disorder prediction 349 371 - -
Csa06g00332 371 MobiDBLite consensus disorder prediction 329 371 - -
Csa06g00332 371 MobiDBLite consensus disorder prediction 177 193 - -
Csa06g00332 371 Gene3D - 207 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00332 Csa-Chr6:2554114 Csa06g02919 Csa-Chr6:25313747 1.81E-42 dispersed
Csa05g02583 Csa-Chr5:27140404 Csa06g00332 Csa-Chr6:2554114 6.69E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31906 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00332 - - csv:101210056 616.69