Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00336 ATGCAGAGCTTTGAAAACCCAGAGCAGTTCTATGCCCATTCTTCTTCTTCTTCAATCTTTCTTCGGGGAGATGATAGTGGAAGATTTCATACGCGTTTTCTTCCGGATATTGAGGAACTTCAACAATCCGCTGTTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCTCAAGCTCTGTTTTCGGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAACACGGATGTGGTTTCCATAGGACGAACGGGGTATTTAGATACAGGACAGGAATTGATGCGGTTGAAAAGGGTGGCTCCGCCGCATTCGCTAGCGGTGACGGTCGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAATAGCCAACAGACTGACACTTCCACAGACATCGACAATGATGAAAGAAACCAGTTCCAAGGAGCTGTACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCTAAAGCAAAATCTGCAGATCAAAAGACTCTTCGTCGACTTGCTCAGAATCGAGAAGCAGCGAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTAGACAGAGGCTTGCGCAGCTAGAGCAGGATCTTCATCGAGCACGTCAACAGGGCATTTTTGTGGCTTCTGGGGTAGGAGACCATTGTGCATCGATGGCAGGAAATGGTGCCTTGGCATTTGATCTTGACTATGCACGTTGGCTTGATGAGCATCAACGGCTTATCAATGATTTGAGAGCTTTGGCAAATTCTCAGCTTGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGACACATTATGATGAACTCTTTAGGCTGAAAAGTGTAGGCGCTAAGGCCGACGTATTCCACATTCTATCGGGGATGTGGAAAACCCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTTCGTTCGTCTGAGCTTCTAAAGATAGTAGGGAGCCATTTGGAGCCTTTAACAGATCAACAATTGATGGGTATATGCAATTTGCAGCAATCTTCTCAACAAGCTGAAGATGCGTTGTCACAAGGCATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCTCTGCTTCTTTAGGGCCAGCCAGTTCTGGAAATGTCGCTGATTACATGGGCCAAATGGCGATTGCAATGAGCAAGCTAACTACGCTTGAGAACTTTCTACATCAGGCTGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCGTTACTTGTGATCAGTGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTTTGGTTAGCACGACCAAAGGAGTGA 1401 46.47 MQSFENPEQFYAHSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAVAIAAFHQDDAVDLSSSSVFGLKSTHNTAFPIHLPYGNTDVVSIGRTGYLDTGQELMRLKRVAPPHSLAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDNDERNQFQGAVHGALMAVDSMDQSKAKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQDLHRARQQGIFVASGVGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRALANSQLGDDELRFLVDGVMTHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSSASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPKE* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2598017 2601995 + CsaV3_6G003360.1 Csa06g00336 531963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00336 466 PANTHER TRANSCRIPTION FACTOR TGA9 50 466 - -
Csa06g00336 466 ProSiteProfiles DOG1 domain profile. 247 463 IPR025422 GO:0006351|GO:0043565
Csa06g00336 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Csa06g00336 466 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Csa06g00336 466 CDD bZIP_HBP1b-like 181 233 - -
Csa06g00336 466 Pfam Seed dormancy control 265 338 IPR025422 GO:0006351|GO:0043565
Csa06g00336 466 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 50 466 - -
Csa06g00336 466 Pfam bZIP transcription factor 180 221 IPR004827 GO:0003700|GO:0006355
Csa06g00336 466 MobiDBLite consensus disorder prediction 128 145 - -
Csa06g00336 466 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Csa06g00336 466 SMART brlzneu 177 248 IPR004827 GO:0003700|GO:0006355
Csa06g00336 466 Gene3D - 180 229 - -
Csa06g00336 466 MobiDBLite consensus disorder prediction 128 151 - -
Csa06g00336 466 Coils Coil 200 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00489 Csa-Chr4:3209914 Csa06g00336 Csa-Chr6:2598017 1.99E-95 dispersed
Csa06g00336 Csa-Chr6:2598017 Csa06g02195 Csa-Chr6:19810153 1.19E-156 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31907 PF14144 DOG1 3.00E-29 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00336 K14431 - csv:101210308 892.493