Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00361 ATGGCTACTGATCAGCTCCACCTTCTCACTGTTCTTGATCGTGCAAAGACCCAATTCTACCACTTCACGGCGGTGGTAATCGCCGGAATGGGCTTCTTCACCGATTCCTACGATCTCTTCTGCATATCTCTCGTCACCAAACTCCTCGGCCGCATTTACTACACCGTCGAAGGCTCCCCCCGTCCCGGAACCCTCCCTTCCGTCGTCGCCGCAGCAGTCAACGGCGTCGCACTCGCCGGCACTCTCGCCGGTCAACTCTTCTTCGGCTGGCTCGGTGACAAGCTCGGCCGCAAGCGCGTCTACGGCCTCACCCTCATCCTCATGGTCGTCTGTTCCATCGCCTCCGGTCTCTCCTTCAGCAGCTCTCCGACTTCCGTCATCACCACACTCTGTTTTTTCCGATTCTGGCTCGGCTTCGGCATCGGCGGCGATTACCCTTTATCTGCCACCATAATGGCAGAATACTCCAATAAGAAAACACGAGGGGCATTCATCGCCGCCGTCTTCGCAATGCAGGGGTTCGGAATTCTCGCCGGCGGCACGGTAGCGATTGTAATTTCGTTAATTTTCAAGACCCTTTTCAAAGCTCCGCCGTACTCGGTGGACGCCGTGAAATCGACGGTGCCAGAAGCGGATTACGTATGGAGGATTATATTAATGTTGGGGTCCTTGCCGGCGCTTTTAACTTACTATTGGCGGATGAAAATGCCGGAAACGCCGCGTTACACTGCCTTGGTTGCGAACGACAATAAGAAAGCTTGTGCCGACATGTCGAAAGTGTTAAATGTGGAAATTGGTCAAAATGTGGTAAATGAGACTCAAAGTAACACAAATGCAAACTCAAACTTTGGGTTTTTTAGTAAGAAATTTCTGGAGAGACATGGGATTCATCTTTTAGGGACTGCCACTACTTGGTTTTTAATCGATGTAGCTTATTATAGCCAAAATTTATTCCAAAAGGACATTTTCAGCGCTGTGGGTTGGTTGCCACCGGCCAAAACAATGAGTGCTTTAGAAGAGGTTTTCAAGATCGCCAAGGCTCAGACACTCATTGCCCTTTGTGGGACGGTTCCTGGCTATTGGGCCACGGTTCTTCTCATAGATCGGGTTGGTCGGTTTTTTATTCAAGTGCTTGGATTTTTCTTCATGACTGTTTTTATGTTTGCGCTTGCAATTCCTTACCGTCATTGGACCGGGAACCATGTTGGGTTTGTTGTGATGTATGGGCTTACTTTTTTCTTTGCTAATTTTGGACCTAATAGTACTACTTTTGTTGTCCCTGCTGAGATTTTTCCAGCTCGGTTTCGGTCAACTTGTCATGGGATATCAGCTGCAGCTGGGAAAGCTGGGGCTATTGTTGGAGCTTTTGGGTTCTTGTATGCTGCTCAGAGTCAAGATCCATCCAAGACCGAACCTGGTTATCCGGCTGGGATCGGAATGAGGAATTCTTTGATCATTTTGGGAATTTTCAATGTGTTTGGGTTACTTTTTAGTTTTTTGGTTCCGGAATCTAAAGGGAAGTCTTTAGAAGAAATGTCAAAAGAGAATGAAGTTGGAGAGGATGGAGAATGTAAAGTGCAAGCTGCTAGATCAGTTGAACAGTTTTAG 1608 47.95 MATDQLHLLTVLDRAKTQFYHFTAVVIAGMGFFTDSYDLFCISLVTKLLGRIYYTVEGSPRPGTLPSVVAAAVNGVALAGTLAGQLFFGWLGDKLGRKRVYGLTLILMVVCSIASGLSFSSSPTSVITTLCFFRFWLGFGIGGDYPLSATIMAEYSNKKTRGAFIAAVFAMQGFGILAGGTVAIVISLIFKTLFKAPPYSVDAVKSTVPEADYVWRIILMLGSLPALLTYYWRMKMPETPRYTALVANDNKKACADMSKVLNVEIGQNVVNETQSNTNANSNFGFFSKKFLERHGIHLLGTATTWFLIDVAYYSQNLFQKDIFSAVGWLPPAKTMSALEEVFKIAKAQTLIALCGTVPGYWATVLLIDRVGRFFIQVLGFFFMTVFMFALAIPYRHWTGNHVGFVVMYGLTFFFANFGPNSTTFVVPAEIFPARFRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDPSKTEPGYPAGIGMRNSLIILGIFNVFGLLFSFLVPESKGKSLEEMSKENEVGEDGECKVQAARSVEQF* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2938148 2939920 - CsaV3_6G003610.1 Csa06g00361 531988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00361 535 Pfam Sugar (and other) transporter 26 514 IPR005828 GO:0016021|GO:0022857|GO:0055085
Csa06g00361 535 CDD MFS_PhT 25 505 - -
Csa06g00361 535 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 506 IPR020846 GO:0022857
Csa06g00361 535 PANTHER PHOSPHATE TRANSPORTER, PUTATIVE-RELATED 3 523 - -
Csa06g00361 535 Gene3D MFS general substrate transporter like domains 20 528 IPR036259 -
Csa06g00361 535 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 3 523 - -
Csa06g00361 535 SUPERFAMILY MFS general substrate transporter 12 515 IPR036259 -
Csa06g00361 535 TIGRFAM 2A0109: phosphate:H+ symporter 12 515 IPR004738 GO:0005315|GO:0006817|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01213 Csa-Chr3:9360966 Csa06g00361 Csa-Chr6:2938148 0 dispersed
Csa03g01215 Csa-Chr3:9373442 Csa06g00361 Csa-Chr6:2938148 0 dispersed
Csa03g02186 Csa-Chr3:19003078 Csa06g00361 Csa-Chr6:2938148 1.28E-126 dispersed
Csa03g02187 Csa-Chr3:19010288 Csa06g00361 Csa-Chr6:2938148 3.57E-80 dispersed
Csa03g02235 Csa-Chr3:19645056 Csa06g00361 Csa-Chr6:2938148 6.32E-45 dispersed
Csa04g02735 Csa-Chr4:26288388 Csa06g00361 Csa-Chr6:2938148 6.79E-173 dispersed
Csa06g00361 Csa-Chr6:2938148 Csa06g03608 Csa-Chr6:29132768 8.26E-13 dispersed
Csa06g00361 Csa-Chr6:2938148 Csa02g01063 Csa-Chr2:10325177 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00361 K08176 - csv:101205342 1055.82