Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00363 ATTACTCATTTACATTTTCAAGCATTGGCTCACAAAGAAAGCTTATTCATTTTGATATATCTCATCAACATGGTGAAGAAGGAATTAGGAAATGATGACAATCATTCAACGTCAGTCCCAACAAGTAAAAAGAAATACAAGGGAGTAAGAATGAGAAGTTGGGGCTCATGGGTTTCTGAAATTAGAGCTCCAAACCAAAAGACAAGAATATGGTTAGGTTCATATTCTACAGCCGAGGCCGCCGCAAGAGCTTACGATGCCGCCCTCTTGTGTCTTAAAGGCTCCTCCGCCAATCTAAATTTTCCAATCTCTTCTTCTTCCTTTGCTCATTTTCACAATTTTCTTGATGATAATAATGTCATGTCTCCTAAGTCCATCCAAAGAGTTGCCGCCGAAGCTGCTGCCAACACCGCGTTTTTTGATGGCAATGTTCAAAGTAACATGGCGGGATCTAGCGATGTCCCACCGTTGTCGCCATTGGTTTCCTCTTCTTCTTCTTCCTCGTCAACGTCAAATAGTGAATCGTTTATGATGTCGGACCCGTCGTGGTTCAACTTTGATGAAATACTTTCTCCTAAGTATGTTGGGCAAATGATGGATTGGACTCTATTTGATCCACCCGTTACTGATGATTTTTACGAAGAAAGTGATATCCGTCTATGGAGCTTCTGCTGA 675 41.48 ITHLHFQALAHKESLFILIYLINMVKKELGNDDNHSTSVPTSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPISSSSFAHFHNFLDDNNVMSPKSIQRVAAEAAANTAFFDGNVQSNMAGSSDVPPLSPLVSSSSSSSSTSNSESFMMSDPSWFNFDEILSPKYVGQMMDWTLFDPPVTDDFYEESDIRLWSFC* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2956251 2957333 - CsaV3_6G003630.1 Csa06g00363 531990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00363 224 Gene3D AP2/ERF domain 44 104 IPR036955 GO:0003700|GO:0006355
Csa06g00363 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 224 - -
Csa06g00363 224 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Csa06g00363 224 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Csa06g00363 224 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Csa06g00363 224 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Csa06g00363 224 CDD AP2 44 104 IPR001471 GO:0003700|GO:0006355
Csa06g00363 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 36 224 - -
Csa06g00363 224 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Csa06g00363 224 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01810 Csa-Chr4:17763310 Csa06g00363 Csa-Chr6:2956251 1.26E-38 dispersed
Csa06g00363 Csa-Chr6:2956251 Csa01g03015 Csa-Chr1:26272725 8.51E-28 dispersed
Csa06g00363 Csa-Chr6:2956251 Csa04g02438 Csa-Chr4:24520725 1.85E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31911 PF00847 AP2 4.50E-12 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00363 - - csv:101205811 363.229