Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00378 ATGGGTTCATGCCTCTCTGGGGACCGCAACAAGCGGACGATCCCTTACTCTGAGATTGCTTCTACATCTCGTGATGATGGCGTTATTACGCGAAGGAACTCCAAGAGGAAGATTACGAGAAAGGGTTCTTCTCCCTCCAATGATTCTTCAAGGGAGATGTCGCTTCATCGAATTCCTGGCCGGATGTTTTTAAATGGAACAACTGATCATGCTTCGCTCTTTACTAGGCAAGGCAAGAAAGGCATCAATCAGGACGCTATGATTGTTTGGGAGAATTTTGGCTCAAAAGAAGACACAATATTTTGTGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAAAAAGTTAGAGATTCTCTTCCTCTAAAACTGAATGCTCAGTTGGAGTTGGATGCTACCAGAAAGGAAGGGCAAGCCAGATGTCAAGTCTCTCCACCAACGCTGGTTCAAAAGGACTCTGGAACCTCTCATTGTGATCCTGATCATCGGGGCAGTTACGGCAACATTTATATCACGCTGAAAGAGTCTTTTTTAAAGGCTTTTAAGGTGATGGACAAGGAACTTAAACTTCATCCATATATCGATTGCTATACCAGTGGTACAACATCAGTTGCTTTGGTGAAACAGGGTAGGCATCTTATTATTGGAAATGTTGGGGACTCGAGGGCTGTTTTAGGGACCAGAGATAAATCTAATTCTCTCGCTGCAGTTCAATTGACTGTGGACCTCAAGCCAAATCATCCTAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCGCTTCAAAATGAGCCTGAGATTTTTCGGGTTTGGCTTCCTAACAACGATTCTCCTGGGCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTGAAAGATTTTGGCGTGATAGCAGTTCCTGATGTTTCTTATCGTCATCTTACAGAGAAAGATGAGTTTGTGGTACTTGCTACTGATGGGGTTTGGGATGTTCTCTCAAATGAAGAGGTTGTAGCAATTGTTGCATCGTCACCGAAATCCTCTGCAGCTCGTGTCCTTGTGGATTCAGCTACTCGAGCATGGAGATTGAAGTACCCCACTGCCAAGGTGGATGATTGTGCTGTAGTCTGCCTGTACCTGGACTCTAACAAGAGTTATGCAATGACAGCTAAGGAGCAGGAGTTCGCCAATGACATGGAAACATAA 1203 44.72 MGSCLSGDRNKRTIPYSEIASTSRDDGVITRRNSKRKITRKGSSPSNDSSREMSLHRIPGRMFLNGTTDHASLFTRQGKKGINQDAMIVWENFGSKEDTIFCGVFDGHGPFGHMVAKKVRDSLPLKLNAQLELDATRKEGQARCQVSPPTLVQKDSGTSHCDPDHRGSYGNIYITLKESFLKAFKVMDKELKLHPYIDCYTSGTTSVALVKQGRHLIIGNVGDSRAVLGTRDKSNSLAAVQLTVDLKPNHPREAERIRLCKGRIFALQNEPEIFRVWLPNNDSPGLAMARAFGDFCLKDFGVIAVPDVSYRHLTEKDEFVVLATDGVWDVLSNEEVVAIVASSPKSSAARVLVDSATRAWRLKYPTAKVDDCAVVCLYLDSNKSYAMTAKEQEFANDMET* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3142443 3147456 - CsaV3_6G003780.1 Csa06g00378 532005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00378 400 MobiDBLite consensus disorder prediction 15 54 - -
Csa06g00378 400 PANTHER ALPHABET, ISOFORM E-RELATED 1 388 - -
Csa06g00378 400 ProSiteProfiles PPM-type phosphatase domain profile. 70 379 IPR001932 -
Csa06g00378 400 MobiDBLite consensus disorder prediction 140 161 - -
Csa06g00378 400 Pfam Protein phosphatase 2C 84 357 IPR001932 -
Csa06g00378 400 Gene3D - 65 381 IPR036457 -
Csa06g00378 400 CDD PP2Cc 70 379 IPR001932 -
Csa06g00378 400 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 388 - -
Csa06g00378 400 SUPERFAMILY PP2C-like 69 381 IPR036457 -
Csa06g00378 400 SMART PP2C_4 59 377 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00838 Csa-Chr2:7649005 Csa06g00378 Csa-Chr6:3142443 1.14E-169 dispersed
Csa03g00360 Csa-Chr3:3006430 Csa06g00378 Csa-Chr6:3142443 1.80E-149 dispersed
Csa04g01655 Csa-Chr4:15862813 Csa06g00378 Csa-Chr6:3142443 2.59E-110 dispersed
Csa04g02524 Csa-Chr4:25021845 Csa06g00378 Csa-Chr6:3142443 2.96E-99 dispersed
Csa06g00378 Csa-Chr6:3142443 Csa07g00429 Csa-Chr7:3097301 9.20E-142 dispersed
Csa06g00378 Csa-Chr6:3142443 Csa02g00474 Csa-Chr2:3366498 5.36E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00378 - - csv:101222320 808.135