Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00382 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAGATGGACATGGGTATGGGTTATTACACCGATGACGATGACCCTGATGCTGAGGATTTCGTCGATGATGATACCGATGATTACTTCGAGGCCAGCCGACGAGAGCAAAATTATACAATACTAAATGAGTCGGACATAAGACAACGGCAAGAGGATGACATTGCAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAATGTTACTAAAGTTCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGGATCTGTTTTGAACCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCACCCTTTCTGTGTATTCTGCTGGGAAGGCTACGTTAGCACATCAATTAATGACGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTTGATCAAGACATGATTAATTCATTGGCTTCCAGTGAAGACAGGAAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACCAAATGGTGCCCAGCGCCTGGTTGTGAGAATGCTGTTCTCTTTGACGCTGGCAATGGAAATTATGACGTTTCTTGCTTCTGCACATATAGCTTCTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCCGAGTCTGAGAATATGAACTGGATATTAGCTAATTCGAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAACCAAGGTTGCATGCACATGACTTGTACACCTCCGTGCAAATTTGAATTTTGCTGGCTATGTCATGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAGATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGCGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCGTGGCTACAGATAATTGAATGTAGACGTGTTTTAAAATGGACTTATGCATATGGTTATTACCTGCCAGAACTGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTCCATCAGTGTGCGGAAAAGGAGCTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTATTTTGAGAACCTTGTTAGAGCATTAGAAAATGGGCTTTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACAAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTGAGTCGAACTGCTAGCTCTACCAGAAGTGGCGACAATGCCACTCACTGGTCATGTGAACACTGTACCTTTGTGAACACTAGATCTGCTACTACATGTGAGATGTGCCATCAACGCCATTGA 1776 43.98 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYTDDDDPDAEDFVDDDTDDYFEASRREQNYTILNESDIRQRQEDDIARISSVLSISRVASIVLLRHFNWNVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFEPYPNSRIKSAACGHPFCVFCWEGYVSTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASSEDRKKYARYLLRSYVEDNKKTKWCPAPGCENAVLFDAGNGNYDVSCFCTYSFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCHGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPELEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTASSTRSGDNATHWSCEHCTFVNTRSATTCEMCHQRH* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3180847 3188945 + CsaV3_6G003820.1 Csa06g00382 532009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00382 591 ProSiteProfiles Zinc finger RanBP2 type profile. 560 591 IPR001876 -
Csa06g00382 591 Pfam Ariadne domain 358 519 IPR045840 -
Csa06g00382 591 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 539 IPR031127 GO:0004842|GO:0016567
Csa06g00382 591 SUPERFAMILY Ran binding protein zinc finger-like 564 589 IPR036443 -
Csa06g00382 591 Gene3D - 267 522 - -
Csa06g00382 591 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Csa06g00382 591 SUPERFAMILY RING/U-box 137 218 - -
Csa06g00382 591 SUPERFAMILY RING/U-box 210 278 - -
Csa06g00382 591 SMART zf_4 566 590 IPR001876 -
Csa06g00382 591 MobiDBLite consensus disorder prediction 523 565 - -
Csa06g00382 591 MobiDBLite consensus disorder prediction 523 543 - -
Csa06g00382 591 Gene3D - 561 591 - -
Csa06g00382 591 Coils Coil 357 377 - -
Csa06g00382 591 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Csa06g00382 591 Pfam IBR domain, a half RING-finger domain 288 336 IPR002867 -
Csa06g00382 591 CDD RING-HC_RBR_TRIAD1_like 140 190 - -
Csa06g00382 591 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 539 - -
Csa06g00382 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 223 IPR013083 -
Csa06g00382 591 SUPERFAMILY RING/U-box 290 338 - -
Csa06g00382 591 SMART ibrneu5 209 271 IPR002867 -
Csa06g00382 591 SMART ibrneu5 275 345 IPR002867 -
Csa06g00382 591 MobiDBLite consensus disorder prediction 551 565 - -
Csa06g00382 591 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Csa06g00382 591 ProSitePatterns Zinc finger RanBP2-type signature. 568 587 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00382 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 1169.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00815 Csa-Chr2:7192051 Csa06g00382 Csa-Chr6:3180847 0 dispersed
Csa02g01229 Csa-Chr2:12038038 Csa06g00382 Csa-Chr6:3180847 1.60E-60 dispersed
Csa03g04588 Csa-Chr3:39941662 Csa06g00382 Csa-Chr6:3180847 3.02E-17 dispersed
Csa06g00382 Csa-Chr6:3180847 Csa07g02076 Csa-Chr7:20047751 1.34E-13 dispersed
Csa06g00382 Csa-Chr6:3180847 Csa06g01664 Csa-Chr6:14618486 3.64E-10 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g01229 . 164 590 ARIADNE family AT4G34370 72.5 5.7e-184 640.6
Csa02g01229 . 58 542 ARIADNE family AT2G16090 77.4 1.5e-225 778.9
Csa02g01229 . 28 543 ARIADNE family AT3G27710 61.9 9.9e-186 646.7
Csa02g01229 . 44 522 ARIADNE family AT3G27720 54.5 5.1e-144 508.1
Csa02g00815 . 1 542 ARIADNE family AT1G05890 63.2 8.3e-218 753.4
Csa06g00382 . 61 529 ARIADNE family AT1G05890 72.7 5.6e-214 740.7
Csa02g00815 . 20 546 ARIADNE family AT1G65430 76.7 3.0e-249 857.8
Csa06g00382 . 16 588 ARIADNE family AT1G65430 67.5 8.2e-239 823.2
Csa02g00815 . 9 460 ARIADNE family AT2G31780 53.4 1.5e-147 519.6
Csa06g00382 . 57 454 ARIADNE family AT2G31780 57.3 4.7e-141 498.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00382 Csa_Chr06 FPKM 43.147156 44.294151 44.713093 42.483334 80.708214 80.272446 82.830482 33.078674 34.434315 36.503998