Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00382 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAGATGGACATGGGTATGGGTTATTACACCGATGACGATGACCCTGATGCTGAGGATTTCGTCGATGATGATACCGATGATTACTTCGAGGCCAGCCGACGAGAGCAAAATTATACAATACTAAATGAGTCGGACATAAGACAACGGCAAGAGGATGACATTGCAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAATGTTACTAAAGTTCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGGATCTGTTTTGAACCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCACCCTTTCTGTGTATTCTGCTGGGAAGGCTACGTTAGCACATCAATTAATGACGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTTGATCAAGACATGATTAATTCATTGGCTTCCAGTGAAGACAGGAAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACCAAATGGTGCCCAGCGCCTGGTTGTGAGAATGCTGTTCTCTTTGACGCTGGCAATGGAAATTATGACGTTTCTTGCTTCTGCACATATAGCTTCTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCCGAGTCTGAGAATATGAACTGGATATTAGCTAATTCGAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAACCAAGGTTGCATGCACATGACTTGTACACCTCCGTGCAAATTTGAATTTTGCTGGCTATGTCATGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAGATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGCGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCGTGGCTACAGATAATTGAATGTAGACGTGTTTTAAAATGGACTTATGCATATGGTTATTACCTGCCAGAACTGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTCCATCAGTGTGCGGAAAAGGAGCTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTATTTTGAGAACCTTGTTAGAGCATTAGAAAATGGGCTTTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACAAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTGAGTCGAACTGCTAGCTCTACCAGAAGTGGCGACAATGCCACTCACTGGTCATGTGAACACTGTACCTTTGTGAACACTAGATCTGCTACTACATGTGAGATGTGCCATCAACGCCATTGA 1776 43.98 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYTDDDDPDAEDFVDDDTDDYFEASRREQNYTILNESDIRQRQEDDIARISSVLSISRVASIVLLRHFNWNVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFEPYPNSRIKSAACGHPFCVFCWEGYVSTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASSEDRKKYARYLLRSYVEDNKKTKWCPAPGCENAVLFDAGNGNYDVSCFCTYSFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCHGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPELEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTASSTRSGDNATHWSCEHCTFVNTRSATTCEMCHQRH* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3180847 3188945 + CsaV3_6G003820.1 Csa06g00382 532009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00382 591 ProSiteProfiles Zinc finger RanBP2 type profile. 560 591 IPR001876 -
Csa06g00382 591 Pfam Ariadne domain 358 519 IPR045840 -
Csa06g00382 591 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 539 IPR031127 GO:0004842|GO:0016567
Csa06g00382 591 SUPERFAMILY Ran binding protein zinc finger-like 564 589 IPR036443 -
Csa06g00382 591 Gene3D - 267 522 - -
Csa06g00382 591 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Csa06g00382 591 SUPERFAMILY RING/U-box 137 218 - -
Csa06g00382 591 SUPERFAMILY RING/U-box 210 278 - -
Csa06g00382 591 SMART zf_4 566 590 IPR001876 -
Csa06g00382 591 MobiDBLite consensus disorder prediction 523 565 - -
Csa06g00382 591 MobiDBLite consensus disorder prediction 523 543 - -
Csa06g00382 591 Gene3D - 561 591 - -
Csa06g00382 591 Coils Coil 357 377 - -
Csa06g00382 591 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Csa06g00382 591 Pfam IBR domain, a half RING-finger domain 288 336 IPR002867 -
Csa06g00382 591 CDD RING-HC_RBR_TRIAD1_like 140 190 - -
Csa06g00382 591 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 539 - -
Csa06g00382 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 223 IPR013083 -
Csa06g00382 591 SUPERFAMILY RING/U-box 290 338 - -
Csa06g00382 591 SMART ibrneu5 209 271 IPR002867 -
Csa06g00382 591 SMART ibrneu5 275 345 IPR002867 -
Csa06g00382 591 MobiDBLite consensus disorder prediction 551 565 - -
Csa06g00382 591 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Csa06g00382 591 ProSitePatterns Zinc finger RanBP2-type signature. 568 587 IPR001876 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00815 Csa-Chr2:7192051 Csa06g00382 Csa-Chr6:3180847 0 dispersed
Csa02g01229 Csa-Chr2:12038038 Csa06g00382 Csa-Chr6:3180847 1.60E-60 dispersed
Csa03g04588 Csa-Chr3:39941662 Csa06g00382 Csa-Chr6:3180847 3.02E-17 dispersed
Csa06g00382 Csa-Chr6:3180847 Csa07g02076 Csa-Chr7:20047751 1.34E-13 dispersed
Csa06g00382 Csa-Chr6:3180847 Csa06g01664 Csa-Chr6:14618486 3.64E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00382 K11968 - csv:101223037 1169.07