Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00382 | ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAGATGGACATGGGTATGGGTTATTACACCGATGACGATGACCCTGATGCTGAGGATTTCGTCGATGATGATACCGATGATTACTTCGAGGCCAGCCGACGAGAGCAAAATTATACAATACTAAATGAGTCGGACATAAGACAACGGCAAGAGGATGACATTGCAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAATGTTACTAAAGTTCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGGATCTGTTTTGAACCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCACCCTTTCTGTGTATTCTGCTGGGAAGGCTACGTTAGCACATCAATTAATGACGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTTGATCAAGACATGATTAATTCATTGGCTTCCAGTGAAGACAGGAAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACCAAATGGTGCCCAGCGCCTGGTTGTGAGAATGCTGTTCTCTTTGACGCTGGCAATGGAAATTATGACGTTTCTTGCTTCTGCACATATAGCTTCTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCCGAGTCTGAGAATATGAACTGGATATTAGCTAATTCGAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAACCAAGGTTGCATGCACATGACTTGTACACCTCCGTGCAAATTTGAATTTTGCTGGCTATGTCATGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAGATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGCGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCGTGGCTACAGATAATTGAATGTAGACGTGTTTTAAAATGGACTTATGCATATGGTTATTACCTGCCAGAACTGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTCCATCAGTGTGCGGAAAAGGAGCTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTATTTTGAGAACCTTGTTAGAGCATTAGAAAATGGGCTTTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACAAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTGAGTCGAACTGCTAGCTCTACCAGAAGTGGCGACAATGCCACTCACTGGTCATGTGAACACTGTACCTTTGTGAACACTAGATCTGCTACTACATGTGAGATGTGCCATCAACGCCATTGA | 1776 | 43.98 | MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYTDDDDPDAEDFVDDDTDDYFEASRREQNYTILNESDIRQRQEDDIARISSVLSISRVASIVLLRHFNWNVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFEPYPNSRIKSAACGHPFCVFCWEGYVSTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASSEDRKKYARYLLRSYVEDNKKTKWCPAPGCENAVLFDAGNGNYDVSCFCTYSFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCHGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPELEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTASSTRSGDNATHWSCEHCTFVNTRSATTCEMCHQRH* | 592 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3180847 | 3188945 | + | CsaV3_6G003820.1 | Csa06g00382 | 532009 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00382 | 591 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 560 | 591 | IPR001876 | - | |
Csa06g00382 | 591 | Pfam | Ariadne domain | 358 | 519 | IPR045840 | - | |
Csa06g00382 | 591 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 26 | 539 | IPR031127 | GO:0004842|GO:0016567 | |
Csa06g00382 | 591 | SUPERFAMILY | Ran binding protein zinc finger-like | 564 | 589 | IPR036443 | - | |
Csa06g00382 | 591 | Gene3D | - | 267 | 522 | - | - | |
Csa06g00382 | 591 | ProSiteProfiles | TRIAD supradomain profile. | 136 | 349 | IPR044066 | - | |
Csa06g00382 | 591 | SUPERFAMILY | RING/U-box | 137 | 218 | - | - | |
Csa06g00382 | 591 | SUPERFAMILY | RING/U-box | 210 | 278 | - | - | |
Csa06g00382 | 591 | SMART | zf_4 | 566 | 590 | IPR001876 | - | |
Csa06g00382 | 591 | MobiDBLite | consensus disorder prediction | 523 | 565 | - | - | |
Csa06g00382 | 591 | MobiDBLite | consensus disorder prediction | 523 | 543 | - | - | |
Csa06g00382 | 591 | Gene3D | - | 561 | 591 | - | - | |
Csa06g00382 | 591 | Coils | Coil | 357 | 377 | - | - | |
Csa06g00382 | 591 | Pfam | IBR domain, a half RING-finger domain | 209 | 271 | IPR002867 | - | |
Csa06g00382 | 591 | Pfam | IBR domain, a half RING-finger domain | 288 | 336 | IPR002867 | - | |
Csa06g00382 | 591 | CDD | RING-HC_RBR_TRIAD1_like | 140 | 190 | - | - | |
Csa06g00382 | 591 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 26 | 539 | - | - | |
Csa06g00382 | 591 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 223 | IPR013083 | - | |
Csa06g00382 | 591 | SUPERFAMILY | RING/U-box | 290 | 338 | - | - | |
Csa06g00382 | 591 | SMART | ibrneu5 | 209 | 271 | IPR002867 | - | |
Csa06g00382 | 591 | SMART | ibrneu5 | 275 | 345 | IPR002867 | - | |
Csa06g00382 | 591 | MobiDBLite | consensus disorder prediction | 551 | 565 | - | - | |
Csa06g00382 | 591 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 186 | IPR001841 | - | |
Csa06g00382 | 591 | ProSitePatterns | Zinc finger RanBP2-type signature. | 568 | 587 | IPR001876 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00815 | Csa-Chr2:7192051 | Csa06g00382 | Csa-Chr6:3180847 | 0 | dispersed | |
Csa02g01229 | Csa-Chr2:12038038 | Csa06g00382 | Csa-Chr6:3180847 | 1.60E-60 | dispersed | |
Csa03g04588 | Csa-Chr3:39941662 | Csa06g00382 | Csa-Chr6:3180847 | 3.02E-17 | dispersed | |
Csa06g00382 | Csa-Chr6:3180847 | Csa07g02076 | Csa-Chr7:20047751 | 1.34E-13 | dispersed | |
Csa06g00382 | Csa-Chr6:3180847 | Csa06g01664 | Csa-Chr6:14618486 | 3.64E-10 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00382 | K11968 | - | csv:101223037 | 1169.07 |