Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00402 ATGGATGTCATCGAACCCGGCGAGGCAGCAGTGACGACTGAGGCGGGAGATGCTCATGAAGTTGGTGACAGTGGTGGTGGGGGTAGTGGAAACGGATCGAATTCCGGCGAAGAAGAAAAGGGGTCATCTTTGTTGTTGTTCGAAGATGGTGAGAAGAATTTTGGTGGGAATCGATGGCCAAGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCTGATATGGATACAATTTTTAGAGATGCAACTCATAAAGCTCCATTATGGGATGAAGTTTCAAGGAAATTAGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTATAAATATCACAAGAGAACCAAAGATGTTAGAAGTGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCAGATGAATTGGAGGCTTTCGATCATCCTTCTAGCCATCATCAAAATCACATGTTACTTCAATCTCACCATCACCACCACCCGTTACCACCAACGCCAACGCCACCGCCACCACAAGTTCTTCCTTCGACGACGCCACCGCCGTCTTACAACCCTCCCGCAACCAAAACAATCAGCTCTACTGTTCCATCCACCATGAATAACACTACGACAAACAACACTTTGCCACCAAAGTCCTCTAATAACCCTCTTTCCAATTTGCCAAACATGGCTGCCAATGTGATATTTTCGAGCTCCACATCGTCATCGACAGCATCGGAGGAAGATCCGTTTCAGAGTAGCAGGAGGAGAAGGAAGAAGAGAAAGTGGAGTGATTTCTTCTTGAGGTTGACAAAGGAAGTAATAGAGAAGCAAGAGGGGCTTCAACTAAAATTCTTAGAAGCTCTAGAGAGAATAGAGAATCAAAGAAAATTGAGAGATGAAGCATGGAGAATGAAAGAGATGACAAGGGTTAATCAAGAACATGAAGTTTTAGTTCAAGAAATGTCCATGGCCGCTGCCAAAGACGCAGCAGTGGTCGCATTTTTACAAAAGATAGCTCCGTTTTCTTCTCCACCAGTGCCAGTACCACCACCACCGACGACGACTCAACCACAAAACAGCGAGAATAATGGAAAGTTGAGCTCCACTATCGGAAGCCATGTAATCTCGATGACGACGACAAATGGAAAGGTGATGAGTAGCATTATTGTAGGAAGCCCATCAAGATGGCCAAAAGGTGAAGTTGAAGCATTGATAAGGCTAAGGACAGAAATGGAAATGAAGTATCAAGAGAATGGGCCAAAAGGGTTATTATGGGAAGAGATTTCATCAGCAATGAGAGGGCTCGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATATTTCAAAAAAGTTAAATATAGTAACAAGAAGAGGCCAGAAGATTCCAAGACATGTCCTTACTTTCACCAATTGGATGCTCTTTATAGAGAGAAAGAGAAAAGTAATATGAATTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTGCATTTCAACCCAATAGTACTCAAGTCATGGGAAATAATTTACAAAGAATAAGTGGTGAAGCAAATCAAGAAGAAGAAGAAGAAGATGATCATGGTGATGATGATGATGATGTTGAAGAAGAGGATATTGGAGGTAGTAGTAGCACAGATGTTGAAGATTGA 1692 41.55 MDVIEPGEAAVTTEAGDAHEVGDSGGGGSGNGSNSGEEEKGSSLLLFEDGEKNFGGNRWPRQETLALLKIRSDMDTIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELEAFDHPSSHHQNHMLLQSHHHHHPLPPTPTPPPPQVLPSTTPPPSYNPPATKTISSTVPSTMNNTTTNNTLPPKSSNNPLSNLPNMAANVIFSSSTSSSTASEEDPFQSSRRRRKKRKWSDFFLRLTKEVIEKQEGLQLKFLEALERIENQRKLRDEAWRMKEMTRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPFSSPPVPVPPPPTTTQPQNSENNGKLSSTIGSHVISMTTTNGKVMSSIIVGSPSRWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISSAMRGLGYNRSSKRCKEKWENINKYFKKVKYSNKKRPEDSKTCPYFHQLDALYREKEKSNMNFDINSQMEPLMVEPEQQWPPAFQPNSTQVMGNNLQRISGEANQEEEEEDDHGDDDDDVEEEDIGGSSSTDVED* 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3437451 3441044 + CsaV3_6G004020.1 Csa06g00402 532029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00402 563 MobiDBLite consensus disorder prediction 192 247 - -
Csa06g00402 563 MobiDBLite consensus disorder prediction 509 529 - -
Csa06g00402 563 MobiDBLite consensus disorder prediction 507 563 - -
Csa06g00402 563 MobiDBLite consensus disorder prediction 166 191 - -
Csa06g00402 563 ProSiteProfiles Myb-like domain profile. 51 115 IPR001005 -
Csa06g00402 563 CDD GT1 57 122 - -
Csa06g00402 563 PANTHER - 15 552 - -
Csa06g00402 563 Gene3D - 59 120 - -
Csa06g00402 563 Gene3D - 395 456 - -
Csa06g00402 563 ProSiteProfiles Myb-like domain profile. 393 451 IPR001005 -
Csa06g00402 563 MobiDBLite consensus disorder prediction 1 41 - -
Csa06g00402 563 Pfam Myb/SANT-like DNA-binding domain 57 138 IPR044822 -
Csa06g00402 563 Pfam Myb/SANT-like DNA-binding domain 393 480 IPR044822 -
Csa06g00402 563 MobiDBLite consensus disorder prediction 342 365 - -
Csa06g00402 563 MobiDBLite consensus disorder prediction 532 563 - -
Csa06g00402 563 CDD GT1 393 458 - -
Csa06g00402 563 SMART sant 55 117 IPR001005 -
Csa06g00402 563 SMART sant 391 453 IPR001005 -
Csa06g00402 563 MobiDBLite consensus disorder prediction 158 256 - -
Csa06g00402 563 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 15 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01591 Csa-Chr2:15068591 Csa06g00402 Csa-Chr6:3437451 3.08E-115 dispersed
Csa02g01808 Csa-Chr2:17395198 Csa06g00402 Csa-Chr6:3437451 1.20E-08 dispersed
Csa06g00402 Csa-Chr6:3437451 Csa06g00403 Csa-Chr6:3474827 4.00E-19 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31914 PF13837 Myb_DNA-bind_4 9.30E-22 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00402 - - csv:101207491 882.093