Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00403 ATGCTTGGAGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGAGACTCCGCCGTACCGGCGACTACGACACATCGTCAAGATGGGCTTATAGTGGACATGGATGAGAATAATAACAATTCTGGTGAAGATGAGAGAGGGAGAAGCAGCGGTGGAGGAGGAGACGACGGTGACCGGGGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGCGGGAAACCAGATAGCAAAACTTATAAGTTCTTCGAACAATTGGAAGCTCTTGAAAATCACCCTCCTCTTAATTTCCATTCTCATTTGTCTAAACCAACTCCTCCCCCACCCCTACCGCCGCCGCCTACCACCGTCATTTCCCACATTCCTTCTACTACTGTTCCATCCACCACCACCACCACCCTACCTCACTTATTGAACATATCGTTCTCTCAACCAAACCCCACAATTCACCTCCCATCTCCTCCGCCCCCTCCCGCTCCGTTGCCATTGAATAACCCTACAAGTTTGCCCACCACCGTCCCTCCCGCTGTCCCTTTCCAAATCAATGTCTCTTCCACGGGAGTGGGAATGGGGTTTCAAAGCATTGAAGCAGATCTCATCTCGAACTCGACTTCTGATGATGTCAACTCGTCCACATCATCAGATGAGGCGTCAAGACGGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTGACAAACAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAACAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAGGAGAGATCAATGGCGGCTGCAAAAGATGCCGCCATTACATCCTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACAACAATCCATCACAACTGTCGCCGCCGCCGCCACCACCACCATCACAGCAACAACAAATTCCAACGTCAAATCCATCGCCAGTTGTGCATCCACAACAACAGCCGCAGCTGCAACCGCAACTGCAACCACCACCGCCGCCCGCACCACAAGCTTCCACATTGCAAGTGGTTGTTCCGAATTCCACCCCACAAAAAGTGGGGAATAATAATGAATTGTTGCAAATGGAGATAATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTTGAAGTTCAAGCACTCATCAAATTGAGAACAAACCTTGAGACCAAATATCAAGAGAATGGGCCAAAAGGGCCATTGTGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAACAAGGCCTGAGGACTCCAAGACTTGCCCTTATTTTCACCAGCTGGATGCTTTGTATAGGGAAAAGAGCAACAACAACAACAACATGATCACATCGTCCACACCGATTATGCAGCATCAACAGCAGCCATTGATGGTTCGTCCGGAGCAACAATGGCCTCCACAACAAGAGATGGCTCGCCCTGACTCGGGAAACGAGGAGATGGAAAGCGAACCAATGGATCGTGATGATAAAGACGACGACGACGAAGATGAAGAGGAAGAGGAAGAGGATGAAGGTGGAGGGAACTATGAGATTGTGGCGAGCAAACCGGCTACCGTGAGTGCTGCAGAGTGA 1962 47.15 MLGDSTTSVLGGGAGGDSAVPATTTHRQDGLIVDMDENNNNSGEDERGRSSGGGGDDGDRGFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPPLPPPPTTVISHIPSTTVPSTTTTTLPHLLNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPAVPFQINVSSTGVGMGFQSIEADLISNSTSDDVNSSTSSDEASRRRRRKRKWKDFFERLMKEVIDKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNNNPSQLSPPPPPPPSQQQQIPTSNPSPVVHPQQQPQLQPQLQPPPPPAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKTRPEDSKTCPYFHQLDALYREKSNNNNNMITSSTPIMQHQQQPLMVRPEQQWPPQQEMARPDSGNEEMESEPMDRDDKDDDDEDEEEEEEDEGGGNYEIVASKPATVSAAE* 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3474827 3478263 - CsaV3_6G004030.1 Csa06g00403 532030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00403 653 MobiDBLite consensus disorder prediction 1 67 - -
Csa06g00403 653 MobiDBLite consensus disorder prediction 611 637 - -
Csa06g00403 653 MobiDBLite consensus disorder prediction 156 177 - -
Csa06g00403 653 MobiDBLite consensus disorder prediction 162 177 - -
Csa06g00403 653 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 24 647 - -
Csa06g00403 653 CDD GT1 65 130 - -
Csa06g00403 653 SMART sant 63 125 IPR001005 -
Csa06g00403 653 SMART sant 471 533 IPR001005 -
Csa06g00403 653 MobiDBLite consensus disorder prediction 40 54 - -
Csa06g00403 653 ProSiteProfiles Myb-like domain profile. 467 531 IPR001005 -
Csa06g00403 653 MobiDBLite consensus disorder prediction 264 286 - -
Csa06g00403 653 PANTHER - 24 647 - -
Csa06g00403 653 MobiDBLite consensus disorder prediction 579 653 - -
Csa06g00403 653 Gene3D - 475 536 - -
Csa06g00403 653 Gene3D - 67 128 - -
Csa06g00403 653 MobiDBLite consensus disorder prediction 380 396 - -
Csa06g00403 653 CDD GT1 474 538 - -
Csa06g00403 653 Coils Coil 301 321 - -
Csa06g00403 653 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Csa06g00403 653 Pfam Myb/SANT-like DNA-binding domain 473 560 IPR044822 -
Csa06g00403 653 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Csa06g00403 653 MobiDBLite consensus disorder prediction 397 412 - -
Csa06g00403 653 MobiDBLite consensus disorder prediction 413 428 - -
Csa06g00403 653 MobiDBLite consensus disorder prediction 368 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02745 Csa-Chr5:28184757 Csa06g00403 Csa-Chr6:3474827 7.12E-07 dispersed
Csa06g00403 Csa-Chr6:3474827 Csa06g00776 Csa-Chr6:6236025 1.13E-07 dispersed
Csa06g00402 Csa-Chr6:3437451 Csa06g00403 Csa-Chr6:3474827 4.00E-19 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31915 PF13837 Myb_DNA-bind_4 3.20E-21 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00403 - - csv:101205810 1006.9