Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00403 | ATGCTTGGAGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGAGACTCCGCCGTACCGGCGACTACGACACATCGTCAAGATGGGCTTATAGTGGACATGGATGAGAATAATAACAATTCTGGTGAAGATGAGAGAGGGAGAAGCAGCGGTGGAGGAGGAGACGACGGTGACCGGGGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGCGGGAAACCAGATAGCAAAACTTATAAGTTCTTCGAACAATTGGAAGCTCTTGAAAATCACCCTCCTCTTAATTTCCATTCTCATTTGTCTAAACCAACTCCTCCCCCACCCCTACCGCCGCCGCCTACCACCGTCATTTCCCACATTCCTTCTACTACTGTTCCATCCACCACCACCACCACCCTACCTCACTTATTGAACATATCGTTCTCTCAACCAAACCCCACAATTCACCTCCCATCTCCTCCGCCCCCTCCCGCTCCGTTGCCATTGAATAACCCTACAAGTTTGCCCACCACCGTCCCTCCCGCTGTCCCTTTCCAAATCAATGTCTCTTCCACGGGAGTGGGAATGGGGTTTCAAAGCATTGAAGCAGATCTCATCTCGAACTCGACTTCTGATGATGTCAACTCGTCCACATCATCAGATGAGGCGTCAAGACGGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTGACAAACAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAACAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAGGAGAGATCAATGGCGGCTGCAAAAGATGCCGCCATTACATCCTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACAACAATCCATCACAACTGTCGCCGCCGCCGCCACCACCACCATCACAGCAACAACAAATTCCAACGTCAAATCCATCGCCAGTTGTGCATCCACAACAACAGCCGCAGCTGCAACCGCAACTGCAACCACCACCGCCGCCCGCACCACAAGCTTCCACATTGCAAGTGGTTGTTCCGAATTCCACCCCACAAAAAGTGGGGAATAATAATGAATTGTTGCAAATGGAGATAATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTTGAAGTTCAAGCACTCATCAAATTGAGAACAAACCTTGAGACCAAATATCAAGAGAATGGGCCAAAAGGGCCATTGTGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAACAAGGCCTGAGGACTCCAAGACTTGCCCTTATTTTCACCAGCTGGATGCTTTGTATAGGGAAAAGAGCAACAACAACAACAACATGATCACATCGTCCACACCGATTATGCAGCATCAACAGCAGCCATTGATGGTTCGTCCGGAGCAACAATGGCCTCCACAACAAGAGATGGCTCGCCCTGACTCGGGAAACGAGGAGATGGAAAGCGAACCAATGGATCGTGATGATAAAGACGACGACGACGAAGATGAAGAGGAAGAGGAAGAGGATGAAGGTGGAGGGAACTATGAGATTGTGGCGAGCAAACCGGCTACCGTGAGTGCTGCAGAGTGA | 1962 | 47.15 | MLGDSTTSVLGGGAGGDSAVPATTTHRQDGLIVDMDENNNNSGEDERGRSSGGGGDDGDRGFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPPLPPPPTTVISHIPSTTVPSTTTTTLPHLLNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPAVPFQINVSSTGVGMGFQSIEADLISNSTSDDVNSSTSSDEASRRRRRKRKWKDFFERLMKEVIDKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNNNPSQLSPPPPPPPSQQQQIPTSNPSPVVHPQQQPQLQPQLQPPPPPAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKTRPEDSKTCPYFHQLDALYREKSNNNNNMITSSTPIMQHQQQPLMVRPEQQWPPQQEMARPDSGNEEMESEPMDRDDKDDDDEDEEEEEEDEGGGNYEIVASKPATVSAAE* | 654 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3474827 | 3478263 | - | CsaV3_6G004030.1 | Csa06g00403 | 532030 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 611 | 637 | - | - | |
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 156 | 177 | - | - | |
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 162 | 177 | - | - | |
Csa06g00403 | 653 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN | 24 | 647 | - | - | |
Csa06g00403 | 653 | CDD | GT1 | 65 | 130 | - | - | |
Csa06g00403 | 653 | SMART | sant | 63 | 125 | IPR001005 | - | |
Csa06g00403 | 653 | SMART | sant | 471 | 533 | IPR001005 | - | |
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
Csa06g00403 | 653 | ProSiteProfiles | Myb-like domain profile. | 467 | 531 | IPR001005 | - | |
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 264 | 286 | - | - | |
Csa06g00403 | 653 | PANTHER | - | 24 | 647 | - | - | |
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 579 | 653 | - | - | |
Csa06g00403 | 653 | Gene3D | - | 475 | 536 | - | - | |
Csa06g00403 | 653 | Gene3D | - | 67 | 128 | - | - | |
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 380 | 396 | - | - | |
Csa06g00403 | 653 | CDD | GT1 | 474 | 538 | - | - | |
Csa06g00403 | 653 | Coils | Coil | 301 | 321 | - | - | |
Csa06g00403 | 653 | Pfam | Myb/SANT-like DNA-binding domain | 65 | 151 | IPR044822 | - | |
Csa06g00403 | 653 | Pfam | Myb/SANT-like DNA-binding domain | 473 | 560 | IPR044822 | - | |
Csa06g00403 | 653 | ProSiteProfiles | Myb-like domain profile. | 65 | 123 | IPR001005 | - | |
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 397 | 412 | - | - | |
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 413 | 428 | - | - | |
Csa06g00403 | 653 | MobiDBLite | consensus disorder prediction | 368 | 429 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g02745 | Csa-Chr5:28184757 | Csa06g00403 | Csa-Chr6:3474827 | 7.12E-07 | dispersed | |
Csa06g00403 | Csa-Chr6:3474827 | Csa06g00776 | Csa-Chr6:6236025 | 1.13E-07 | dispersed | |
Csa06g00402 | Csa-Chr6:3437451 | Csa06g00403 | Csa-Chr6:3474827 | 4.00E-19 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31915 | PF13837 | Myb_DNA-bind_4 | 3.20E-21 | CL0123 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00403 | - | - | csv:101205810 | 1006.9 |