Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00404 ATGTCGTTTCGTAGTATAGTTCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCCAGGCGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCATGACCAACCTCTGGTAATTCAAACCAGTCGTTGGGCTAGTCTCCCACCTGAGCTATTGCGGGATGTAGTCACGAGACTGGAGGAGAGTGAGAGTGTGTGGCCTGCTCGAAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAATCCGGAGTTCTCTGGAAAAATTACCTTCCCTGTCTCCTTAAAACAGCCAGGGACTCGGGATGGAACCACTCAGTGCTTTATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTCTGCCTAAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGAAGAACAACCTGCACTGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCAAGCAACACTTACATTGGAAAACTAAGGTCAAATTTTCTTGGGACCAAGTTCATTATTTATGATACACAGCCTCCATACAACAATGCCCAGATTTCCCCACCTGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCTCCAAAAGTCCCAACTGGTAGCTATGACATTGCTCAAGTCACTTATGAATTGAACGTTCTTGGCACAAGAGGCCCCCGAAAGATGCACTGCACAATGCACTCCATCCCTACCTCATCTCTGGACGCTGGTGGCACTGTTCCAGGCCAACCCGAGGTTGTTCCTCGACTCCTTGGGGATTCATTTCGAAGCATATCATTCTCCAAGTCTGTCTTCAACTCTACAGAGTTCGGTAGTTCCCGTTTCTCTGACATTGTTGGCTCTCGAGACGAAGATGAGACGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCGCCACGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTAACTGTTGCCTCTGTCAAAAACTTTCAACTGATAGCCGCTACAGAGCCTTCTTCAACAGCTACAAACCAATCACAGCCAAATCAACATGCCCAATCCTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGAAAGGTTGGGAAAGACATGTTTACCATGGATTACCGTTATCCATTGTCAGCATTTCAAGCTTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1293 45.55 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLHDQPLVIQTSRWASLPPELLRDVVTRLEESESVWPARKHVVACAAVCRSWREMCKEIVKNPEFSGKITFPVSLKQPGTRDGTTQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYDIAQVTYELNVLGTRGPRKMHCTMHSIPTSSLDAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFGSSRFSDIVGSRDEDETGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3531561 3538228 + CsaV3_6G004040.1 Csa06g00404 532031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00404 430 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Csa06g00404 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Csa06g00404 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Csa06g00404 430 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Csa06g00404 430 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Csa06g00404 430 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Csa06g00404 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Csa06g00404 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Csa06g00404 430 PANTHER TUBBY-RELATED 1 430 - -
Csa06g00404 430 Pfam Tub family 114 425 IPR000007 -
Csa06g00404 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Csa06g00404 430 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 430 - -
Csa06g00404 430 Gene3D Tubby Protein; Chain A 112 424 IPR025659 -
Csa06g00404 430 Pfam F-box domain 53 101 IPR001810 GO:0005515
Csa06g00404 430 Gene3D - 48 101 - -
Csa06g00404 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Csa06g00404 430 MobiDBLite consensus disorder prediction 366 386 - -
Csa06g00404 430 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01871 Csa-Chr3:14425098 Csa06g00404 Csa-Chr6:3531561 0 dispersed
Csa06g00404 Csa-Chr6:3531561 Csa06g00522 Csa-Chr6:4410794 0 dispersed
Csa06g00404 Csa-Chr6:3531561 Csa03g01411 Csa-Chr3:10605878 3.51E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31916 PF01167 Tub 3.30E-117 CL0395 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00404 K19600 - csv:101206041 876.315