Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00409 ATGGCGTCTTCTTCTTCTTCTTCTTCTTTCTCTGATCATCGACTTTTCTTCTCCTTCTTAGCCTTCACCCTCTCTGCATTCATCTTCTTCCTCGCTCATAAACGCACCTCTAAGCCACGTCTCAACCTCCCCCCAGGACCCCGTGGCTGGCCCATCGTCGGAAACCTCTTCCAGGTCGCTCGCACCGGAAAGCATTTCTTCGAATACATTGAAGACATACGCCACAATTACGGCCCAATCTTGACTCTTCAGATGGGCGCTCGCACCATGATCATCTTGTCCGGACCCGACCTCATCCACGAAGCCTTAATCAAACGCGGCCCAGCTTTCGCCAGCCGTCCGCCCGAAAATCCAACTCGAATCGTCTTCAGCAACAACAAATTCTCCGTTAACGCCGCCCTCTACGGCGGTGTCTGGCGCTCACTCCGTCGTAATATGGTTGAGAATATGCTCTCTTCCACTCGCTTGAAGGAGTTTCGCGATGTTAGAAAGAAGGCCATGGATAAGCTCGTTCAACGCATTCGAACCGACGCTGAGGCGAACGGCGGCGCCGTTTGGGTGTTGAAAAACGCTCGATTCGCTGTGTTCTGTATTCTCTTAGCAATGTGTTTCGGATTAGAAATGGATGAGGAATCGGTTGAGCAAATGGATCAAGTTCTTAAAACTGTTCTGATCACCGTCGATCCCAGAATCGACGATTTTCTCCCGATTTTGAGGCCGTTCTTTGCTAAACAGAGGAAACGCGCGATGGAAGTAAGAAGAGAGCAAATCGAATTCGTTGTCCAGTTCATCAATCGAAGAAAAAAAGCACTTCAAAATCCAGGTTCAGACAATAAAGCAACTTCATTTTCGTACCTCGATACACTCTTCGATCTCAAAGTGGACGGCCGGAAATCTACCCCAACCGACGCCGAACTAGTCACTCTCTGTTCCGAATTCCTCAACGGAGGCGTGGACACGACGGCAACCGCCATCGAATGGGGAATCGCAGAGCTAATCACAAACCCTAACGTTCAGAAAAAGCTTTACGAAGAAATCAAGCAATTAGTAGGCGACAGAAAAGTAGATGAATCTGATGTTCAGAAATTGCCTTATCTTCAAGCGGTTGTGAAGGAATTGCTGAGAAAGCATCCTCCGACGTACTTCTCGCTGACACACTCAGGGATCGAGGCGTCTAAACTGGGGGGATACGATATTCCGATGGAGGCGAGTGTGGAGGTTTATTTAGCCGGAATGAGTAACGATCCGAAAGTGTGGAAGAATCCGGAGAAATTTGAACCGGAGAGATTCATGTCGGGGGAGGAAGAGGTGGATATGACAGGGATTAAAGGAATGAAAATGATTCCGTTCGGAGTTGGAAGGAGAATTTGCCCGGGTTTGGGAATGGCGACGATTCATGTTCATCTGATGATGGCGAAGTTGGTTCAGGAATTTGAATGGAGTTCGTATCCGCCGAATAGTGAATTGGATTTTACGAAGAAGTATGAATTTACTGTTGTGATGAAGAATTCTCTTAGAGCCATTGCCACAACCAGAGCTTGA 1542 47.99 MASSSSSSSFSDHRLFFSFLAFTLSAFIFFLAHKRTSKPRLNLPPGPRGWPIVGNLFQVARTGKHFFEYIEDIRHNYGPILTLQMGARTMIILSGPDLIHEALIKRGPAFASRPPENPTRIVFSNNKFSVNAALYGGVWRSLRRNMVENMLSSTRLKEFRDVRKKAMDKLVQRIRTDAEANGGAVWVLKNARFAVFCILLAMCFGLEMDEESVEQMDQVLKTVLITVDPRIDDFLPILRPFFAKQRKRAMEVRREQIEFVVQFINRRKKALQNPGSDNKATSFSYLDTLFDLKVDGRKSTPTDAELVTLCSEFLNGGVDTTATAIEWGIAELITNPNVQKKLYEEIKQLVGDRKVDESDVQKLPYLQAVVKELLRKHPPTYFSLTHSGIEASKLGGYDIPMEASVEVYLAGMSNDPKVWKNPEKFEPERFMSGEEEVDMTGIKGMKMIPFGVGRRICPGLGMATIHVHLMMAKLVQEFEWSSYPPNSELDFTKKYEFTVVMKNSLRAIATTRA* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3567044 3568585 + CsaV3_6G004090.1 Csa06g00409 532036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00409 513 Pfam Cytochrome P450 44 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 8 510 - -
Csa06g00409 513 Gene3D Cytochrome P450 29 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 SUPERFAMILY Cytochrome P450 44 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS E-class P450 group I signature 74 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS E-class P450 group I signature 98 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS E-class P450 group I signature 408 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Csa06g00409 513 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00409 513 PANTHER CYTOCHROME P450 77A4 8 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02744 Csa-Chr5:28178417 Csa06g00409 Csa-Chr6:3567044 0 dispersed
Csa06g00409 Csa-Chr6:3567044 Csa06g03530 Csa-Chr6:28747373 4.54E-159 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00409 K21995 - csv:101206763 1000.73