Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00450 ATGCCTGCTTTCTCAATCTCTTTAATGTTGTCTTGCAGGTATAATGTTTTGGGAATGCACGAGTTTGATAGTGACAGGAAGCGGATGTCAGTTATATTGGGGTGTCCTGATACGACATTTAAAGTGTTTGTAAAAGGTGCTGATAACTCCATGTTCAAGGTGATGGGTGAAAATCTGAACACAAATATCATTCAATCAACTAAAGCTCATCTTTATTCATACTCATCAAAGGGTCTCAGAACACTGGTTATTGGGATGAAAGAACTCAGTTCCTCCGATTTTGATAAATGGCACATGATGTTTGAGGAAGCAAGTACCGCTTTGATCGGTAGGGCTGCTAAGCTTCGCAAGGTTGCCAGCAGCATTGAAAACAATTTGTTCATATTAGGTGCCTCAGGCATTGAAGATAAGTTACAAAAAGGTGTGCCAGAAGCGATAGAAGCTTTAAGGACGGCAGGAATTAAAGTATGGGTTTTGACTGGTGACAAGCAAGAAACTGCCATTTCAATAGGTTACTCCTCAAAACTTTTGACAAACAAGATGACTCAAATTATAATTAACAGCAATTCAGCAGAATCATGCAAAAGGAAACTCGAAGATGCAATAATCATGTCAAAGACTGCCTCAGGCGCTTCACTGGATAATGAAAGAAGCACTGAAGTTGTAACGACTTCAATTGCGTTGATCATTGATGGTAGCAGCCTCGTTCATATTCTTGACAGTAAACTCGAAGAACAGGTAAATGCTTATAAACCTGCAAATTTTATATACTTTGGAATGTCCAACGCTTACCAAACTCTCATGTTTCAGCTTTTCCAACTATCTTGTAACTGTTCGGTGGTGTTATGCTGTCGAGTTGCCCCATTGCAAAAAGCTGGAATTGTTGCCCTAGTGAAGAAAAGGACTTCTGACATGACACTTGCCATTGGTGACGGTGCGAATGATGTGTCAATGATCCAAAAGGCAGATGTGGGTGTTGGAATCAGTGGTTTAGAGGGTCGACAAGCTGTTATGGCATCAGATTTTGCTATGGGACAATTTAGATTCTTGGTTCCTCTTCTTTTGGTCCATGGGCATTGGAATTACCAGCGGATGGGCTACATGATCTTGTACAATTTTTACAGAAATGCAGTATTTGTTCTTGTTTTGTTTTGGTATGTGCTATTTACTGGTTACTCATTGACAACGGCGATCAACCAATGGAGTAGTGTTCTCTACTCTATAATCTATACTTGTTTGCCCACTATTATTGTTGGAATTCTTGACAAGGACTTGGGTAGAAGGACTCTTCTTAGTTACCCTCAACTCTATGGGGCTGGCCATAGACAGGAAAGCTACAACTCTAGATTGTTTTGGTTAACTATGATTGACACTGTGTGGCAAAGCATTGCTATTTTCTTTATCCCCCTCTTTGCATTTTGGGCTACCAACGTCGACATTTCAGGCCTTGGAGATCTCTGGCTACTTGCTACAGTCATCGTTGTCAACTTACATTTATCAATGGATGTCGTTCGATGGTATAACTTCACCCATGCTGTAATCTGGGGATCCACTCTCGCAACTGTCATTTGTGTCATTGTTCTTGATTCGATATTGTCGCTTCCCGGTTACTGGGCGATATATCACGTGGCGAGCACAGCATCTTTTTGGCTATGTTTGCTGTGTATCATTGTAGCAGCGTTACTTCCTCGTTTTGTCGTAAAATACCTTTATCAATATTACTGTCCATGTGACATCCAAATAGCAAGAGAGGCTGATAAGTTCGGGCTTACAAGAGAGCTGGGAGTTGTACAAACAGAGATGATTCCAGTCCTCAACAACTCTTCACAAGTATGA 1836 40.9 MPAFSISLMLSCRYNVLGMHEFDSDRKRMSVILGCPDTTFKVFVKGADNSMFKVMGENLNTNIIQSTKAHLYSYSSKGLRTLVIGMKELSSSDFDKWHMMFEEASTALIGRAAKLRKVASSIENNLFILGASGIEDKLQKGVPEAIEALRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSAESCKRKLEDAIIMSKTASGASLDNERSTEVVTTSIALIIDGSSLVHILDSKLEEQVNAYKPANFIYFGMSNAYQTLMFQLFQLSCNCSVVLCCRVAPLQKAGIVALVKKRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTGYSLTTAINQWSSVLYSIIYTCLPTIIVGILDKDLGRRTLLSYPQLYGAGHRQESYNSRLFWLTMIDTVWQSIAIFFIPLFAFWATNVDISGLGDLWLLATVIVVNLHLSMDVVRWYNFTHAVIWGSTLATVICVIVLDSILSLPGYWAIYHVASTASFWLCLLCIIVAALLPRFVVKYLYQYYCPCDIQIAREADKFGLTRELGVVQTEMIPVLNNSSQV* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3849237 3851897 - CsaV3_6G004500.1 Csa06g00450 532077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00450 611 Pfam Cation transport ATPase (P-type) 14 53 - -
Csa06g00450 611 SUPERFAMILY HAD-like 122 357 IPR036412 -
Csa06g00450 611 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 279 392 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g00450 611 Gene3D - 125 349 IPR023214 -
Csa06g00450 611 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 13 247 - -
Csa06g00450 611 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 269 609 - -
Csa06g00450 611 Pfam Phospholipid-translocating P-type ATPase C-terminal 337 576 IPR032630 -
Csa06g00450 611 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 269 609 - -
Csa06g00450 611 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 13 136 IPR023299 GO:0000166
Csa06g00450 611 SUPERFAMILY Calcium ATPase, transmembrane domain M 358 576 IPR023298 -
Csa06g00450 611 Gene3D - 8 106 IPR023299 GO:0000166
Csa06g00450 611 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 13 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00450 Csa-Chr6:3849237 Csa07g02379 Csa-Chr7:21930097 1.03E-106 dispersed
Csa06g00450 Csa-Chr6:3849237 Csa01g00638 Csa-Chr1:4052892 1.18E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00450 K14802 - csv:101212953 1109.75