Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00450 | ATGCCTGCTTTCTCAATCTCTTTAATGTTGTCTTGCAGGTATAATGTTTTGGGAATGCACGAGTTTGATAGTGACAGGAAGCGGATGTCAGTTATATTGGGGTGTCCTGATACGACATTTAAAGTGTTTGTAAAAGGTGCTGATAACTCCATGTTCAAGGTGATGGGTGAAAATCTGAACACAAATATCATTCAATCAACTAAAGCTCATCTTTATTCATACTCATCAAAGGGTCTCAGAACACTGGTTATTGGGATGAAAGAACTCAGTTCCTCCGATTTTGATAAATGGCACATGATGTTTGAGGAAGCAAGTACCGCTTTGATCGGTAGGGCTGCTAAGCTTCGCAAGGTTGCCAGCAGCATTGAAAACAATTTGTTCATATTAGGTGCCTCAGGCATTGAAGATAAGTTACAAAAAGGTGTGCCAGAAGCGATAGAAGCTTTAAGGACGGCAGGAATTAAAGTATGGGTTTTGACTGGTGACAAGCAAGAAACTGCCATTTCAATAGGTTACTCCTCAAAACTTTTGACAAACAAGATGACTCAAATTATAATTAACAGCAATTCAGCAGAATCATGCAAAAGGAAACTCGAAGATGCAATAATCATGTCAAAGACTGCCTCAGGCGCTTCACTGGATAATGAAAGAAGCACTGAAGTTGTAACGACTTCAATTGCGTTGATCATTGATGGTAGCAGCCTCGTTCATATTCTTGACAGTAAACTCGAAGAACAGGTAAATGCTTATAAACCTGCAAATTTTATATACTTTGGAATGTCCAACGCTTACCAAACTCTCATGTTTCAGCTTTTCCAACTATCTTGTAACTGTTCGGTGGTGTTATGCTGTCGAGTTGCCCCATTGCAAAAAGCTGGAATTGTTGCCCTAGTGAAGAAAAGGACTTCTGACATGACACTTGCCATTGGTGACGGTGCGAATGATGTGTCAATGATCCAAAAGGCAGATGTGGGTGTTGGAATCAGTGGTTTAGAGGGTCGACAAGCTGTTATGGCATCAGATTTTGCTATGGGACAATTTAGATTCTTGGTTCCTCTTCTTTTGGTCCATGGGCATTGGAATTACCAGCGGATGGGCTACATGATCTTGTACAATTTTTACAGAAATGCAGTATTTGTTCTTGTTTTGTTTTGGTATGTGCTATTTACTGGTTACTCATTGACAACGGCGATCAACCAATGGAGTAGTGTTCTCTACTCTATAATCTATACTTGTTTGCCCACTATTATTGTTGGAATTCTTGACAAGGACTTGGGTAGAAGGACTCTTCTTAGTTACCCTCAACTCTATGGGGCTGGCCATAGACAGGAAAGCTACAACTCTAGATTGTTTTGGTTAACTATGATTGACACTGTGTGGCAAAGCATTGCTATTTTCTTTATCCCCCTCTTTGCATTTTGGGCTACCAACGTCGACATTTCAGGCCTTGGAGATCTCTGGCTACTTGCTACAGTCATCGTTGTCAACTTACATTTATCAATGGATGTCGTTCGATGGTATAACTTCACCCATGCTGTAATCTGGGGATCCACTCTCGCAACTGTCATTTGTGTCATTGTTCTTGATTCGATATTGTCGCTTCCCGGTTACTGGGCGATATATCACGTGGCGAGCACAGCATCTTTTTGGCTATGTTTGCTGTGTATCATTGTAGCAGCGTTACTTCCTCGTTTTGTCGTAAAATACCTTTATCAATATTACTGTCCATGTGACATCCAAATAGCAAGAGAGGCTGATAAGTTCGGGCTTACAAGAGAGCTGGGAGTTGTACAAACAGAGATGATTCCAGTCCTCAACAACTCTTCACAAGTATGA | 1836 | 40.9 | MPAFSISLMLSCRYNVLGMHEFDSDRKRMSVILGCPDTTFKVFVKGADNSMFKVMGENLNTNIIQSTKAHLYSYSSKGLRTLVIGMKELSSSDFDKWHMMFEEASTALIGRAAKLRKVASSIENNLFILGASGIEDKLQKGVPEAIEALRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSAESCKRKLEDAIIMSKTASGASLDNERSTEVVTTSIALIIDGSSLVHILDSKLEEQVNAYKPANFIYFGMSNAYQTLMFQLFQLSCNCSVVLCCRVAPLQKAGIVALVKKRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTGYSLTTAINQWSSVLYSIIYTCLPTIIVGILDKDLGRRTLLSYPQLYGAGHRQESYNSRLFWLTMIDTVWQSIAIFFIPLFAFWATNVDISGLGDLWLLATVIVVNLHLSMDVVRWYNFTHAVIWGSTLATVICVIVLDSILSLPGYWAIYHVASTASFWLCLLCIIVAALLPRFVVKYLYQYYCPCDIQIAREADKFGLTRELGVVQTEMIPVLNNSSQV* | 612 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3849237 | 3851897 | - | CsaV3_6G004500.1 | Csa06g00450 | 532077 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00450 | 611 | Pfam | Cation transport ATPase (P-type) | 14 | 53 | - | - | |
Csa06g00450 | 611 | SUPERFAMILY | HAD-like | 122 | 357 | IPR036412 | - | |
Csa06g00450 | 611 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 279 | 392 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa06g00450 | 611 | Gene3D | - | 125 | 349 | IPR023214 | - | |
Csa06g00450 | 611 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 13 | 247 | - | - | |
Csa06g00450 | 611 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 269 | 609 | - | - | |
Csa06g00450 | 611 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 337 | 576 | IPR032630 | - | |
Csa06g00450 | 611 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 269 | 609 | - | - | |
Csa06g00450 | 611 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 13 | 136 | IPR023299 | GO:0000166 | |
Csa06g00450 | 611 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 358 | 576 | IPR023298 | - | |
Csa06g00450 | 611 | Gene3D | - | 8 | 106 | IPR023299 | GO:0000166 | |
Csa06g00450 | 611 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 13 | 247 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g00450 | Csa-Chr6:3849237 | Csa07g02379 | Csa-Chr7:21930097 | 1.03E-106 | dispersed | |
Csa06g00450 | Csa-Chr6:3849237 | Csa01g00638 | Csa-Chr1:4052892 | 1.18E-108 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00450 | K14802 | - | csv:101212953 | 1109.75 |