Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00456 | ATGGGGATTCAAACTATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAGTTCCAGCCATTGGTTCGTCAAAATTCACTGTATAGTCTCACACTGGATGAGGTTCAAAATCAGTTGGGTGATCTAGGAAAGCCATTAATCAGCATGAACCTTGATGAGCTTCTTAAAAATGTATGGACTGCTGAGGCCAACCAAACTGTTGGTAAGGACAATGAGGACAATAATATCTTGGCCAATCAAACATCCCTACAACGTCAGGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAGAAGACCGTTGATGAGGTGTGGAGAGACATTCAACAAAGCAAAGACAGTGAGGAGAAGAAGTCTCGTGAACGACAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCAGGGGTGGTTGCTGAGACATCGTCAAATAAAAAAGGCGCGGGCCCTGTTGTCGAAATTGATGCAAATATCACACCCCAGTTCCAACAAACGCAGTGGATGCAGTACCCTCAACCTCAGTATCAGTCTCAACAAGCAGCAATGATGGGGGTCTACATGTCAGGCCAGCCTATTCCCCAGCCGCTGCATGTGGGAGGTGGTGCTGTGATGGATGTTCCATATGTAGACAACCAGCTGACATTGCCAACGCCTTTGATGGGAGCTTTATCTGATACACAGGCATCCGGAAGAAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAGAGGATGATAAAGAATCGGGAATCTGCTGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAGCTGGAGAATAAAGTTTCGCGTTTGGAAGAGGAGAACGAAAGGCTCAGGAAACGAAAGGAGCTGGAAAAGATGCTACCGTTGGCTCCCTCACCTGAGCCAAAGTATCAGCTTCGAAGAACATCGTCAGCGCCGTTCTAA | 966 | 47.2 | MGIQTMGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGKDNEDNNILANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKDSEEKKSRERQPTLGEMTLEDFLVKAGVVAETSSNKKGAGPVVEIDANITPQFQQTQWMQYPQPQYQSQQAAMMGVYMSGQPIPQPLHVGGGAVMDVPYVDNQLTLPTPLMGALSDTQASGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKMLPLAPSPEPKYQLRRTSSAPF* | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3897355 | 3903444 | + | CsaV3_6G004560.1 | Csa06g00456 | 532083 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00456 | 321 | MobiDBLite | consensus disorder prediction | 256 | 301 | - | - | |
Csa06g00456 | 321 | PANTHER | BZIP TRANSCRIPTION FACTOR | 4 | 319 | - | - | |
Csa06g00456 | 321 | SUPERFAMILY | Leucine zipper domain | 251 | 296 | IPR046347 | GO:0003700|GO:0006355 | |
Csa06g00456 | 321 | Pfam | bZIP transcription factor | 251 | 298 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g00456 | 321 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 249 | 294 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g00456 | 321 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 4 | 319 | IPR043452 | GO:0003700|GO:0045893 | |
Csa06g00456 | 321 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa06g00456 | 321 | CDD | bZIP_plant_BZIP46 | 251 | 305 | - | - | |
Csa06g00456 | 321 | Gene3D | - | 249 | 302 | - | - | |
Csa06g00456 | 321 | MobiDBLite | consensus disorder prediction | 256 | 321 | - | - | |
Csa06g00456 | 321 | SMART | brlzneu | 247 | 319 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g00456 | 321 | Coils | Coil | 267 | 301 | - | - | |
Csa06g00456 | 321 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 254 | 269 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03079 | Csa-Chr1:26805528 | Csa06g00456 | Csa-Chr6:3897355 | 1.05E-84 | dispersed | |
Csa02g01943 | Csa-Chr2:18211483 | Csa06g00456 | Csa-Chr6:3897355 | 6.85E-17 | dispersed | |
Csa03g00060 | Csa-Chr3:522366 | Csa06g00456 | Csa-Chr6:3897355 | 1.91E-21 | dispersed | |
Csa04g01836 | Csa-Chr4:18003140 | Csa06g00456 | Csa-Chr6:3897355 | 3.65E-29 | dispersed | |
Csa06g00456 | Csa-Chr6:3897355 | Csa06g01305 | Csa-Chr6:10929536 | 1.59E-31 | dispersed | |
Csa06g00456 | Csa-Chr6:3897355 | Csa03g03416 | Csa-Chr3:30797075 | 1.23E-08 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31920 | PF00170 | bZIP_1 | 3.40E-13 | CL0018 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00456 | K14432 | - | csv:101213915 | 579.326 |