Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00456 ATGGGGATTCAAACTATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAGTTCCAGCCATTGGTTCGTCAAAATTCACTGTATAGTCTCACACTGGATGAGGTTCAAAATCAGTTGGGTGATCTAGGAAAGCCATTAATCAGCATGAACCTTGATGAGCTTCTTAAAAATGTATGGACTGCTGAGGCCAACCAAACTGTTGGTAAGGACAATGAGGACAATAATATCTTGGCCAATCAAACATCCCTACAACGTCAGGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAGAAGACCGTTGATGAGGTGTGGAGAGACATTCAACAAAGCAAAGACAGTGAGGAGAAGAAGTCTCGTGAACGACAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCAGGGGTGGTTGCTGAGACATCGTCAAATAAAAAAGGCGCGGGCCCTGTTGTCGAAATTGATGCAAATATCACACCCCAGTTCCAACAAACGCAGTGGATGCAGTACCCTCAACCTCAGTATCAGTCTCAACAAGCAGCAATGATGGGGGTCTACATGTCAGGCCAGCCTATTCCCCAGCCGCTGCATGTGGGAGGTGGTGCTGTGATGGATGTTCCATATGTAGACAACCAGCTGACATTGCCAACGCCTTTGATGGGAGCTTTATCTGATACACAGGCATCCGGAAGAAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAGAGGATGATAAAGAATCGGGAATCTGCTGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAGCTGGAGAATAAAGTTTCGCGTTTGGAAGAGGAGAACGAAAGGCTCAGGAAACGAAAGGAGCTGGAAAAGATGCTACCGTTGGCTCCCTCACCTGAGCCAAAGTATCAGCTTCGAAGAACATCGTCAGCGCCGTTCTAA 966 47.2 MGIQTMGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGKDNEDNNILANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKDSEEKKSRERQPTLGEMTLEDFLVKAGVVAETSSNKKGAGPVVEIDANITPQFQQTQWMQYPQPQYQSQQAAMMGVYMSGQPIPQPLHVGGGAVMDVPYVDNQLTLPTPLMGALSDTQASGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKMLPLAPSPEPKYQLRRTSSAPF* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3897355 3903444 + CsaV3_6G004560.1 Csa06g00456 532083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00456 321 MobiDBLite consensus disorder prediction 256 301 - -
Csa06g00456 321 PANTHER BZIP TRANSCRIPTION FACTOR 4 319 - -
Csa06g00456 321 SUPERFAMILY Leucine zipper domain 251 296 IPR046347 GO:0003700|GO:0006355
Csa06g00456 321 Pfam bZIP transcription factor 251 298 IPR004827 GO:0003700|GO:0006355
Csa06g00456 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 294 IPR004827 GO:0003700|GO:0006355
Csa06g00456 321 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 319 IPR043452 GO:0003700|GO:0045893
Csa06g00456 321 MobiDBLite consensus disorder prediction 1 21 - -
Csa06g00456 321 CDD bZIP_plant_BZIP46 251 305 - -
Csa06g00456 321 Gene3D - 249 302 - -
Csa06g00456 321 MobiDBLite consensus disorder prediction 256 321 - -
Csa06g00456 321 SMART brlzneu 247 319 IPR004827 GO:0003700|GO:0006355
Csa06g00456 321 Coils Coil 267 301 - -
Csa06g00456 321 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03079 Csa-Chr1:26805528 Csa06g00456 Csa-Chr6:3897355 1.05E-84 dispersed
Csa02g01943 Csa-Chr2:18211483 Csa06g00456 Csa-Chr6:3897355 6.85E-17 dispersed
Csa03g00060 Csa-Chr3:522366 Csa06g00456 Csa-Chr6:3897355 1.91E-21 dispersed
Csa04g01836 Csa-Chr4:18003140 Csa06g00456 Csa-Chr6:3897355 3.65E-29 dispersed
Csa06g00456 Csa-Chr6:3897355 Csa06g01305 Csa-Chr6:10929536 1.59E-31 dispersed
Csa06g00456 Csa-Chr6:3897355 Csa03g03416 Csa-Chr3:30797075 1.23E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31920 PF00170 bZIP_1 3.40E-13 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00456 K14432 - csv:101213915 579.326