Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00461 ATGAACACCATGGGAATCTTTGAGGATATTGGCTTTTGCCGAAATCTTGAATATTTTTCGGCTCCTCCTGGGGAACAAGAGACAGCTCAGGAGCATGAAGCTGAAGCTGTTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGTGACCGAATGCTTTTGAGGCGACTCAAAGAACAGAGCAAAGAGAAGGAAGGTGCTGATAGTTCAAAGCAGCGTCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGCAAAGCTCAAGGGTTCGTTTATGGGATTATTCCTGAGAAAGGAAAACCAGTCAGTGGAGCTTCTGATAATCTTCGTGCATGGTGGAAAGAAAAGGTTAGATTCGATAGAAATGGCCCTGCAGCAATTGCCAAATATCAGGCAGACCACGCAATTCCTGGAAACAACAATGACTGCAATTCAGTGGCATCCACTCCTCACACCTTACAAGAGCTTCAAGACACAACCCTTGGATCACTTTTGTCAGCTCTGATGCAGCACTGTGATCCACCTCAGAGGCGTTTTCCATTGGAGAAGGGAGTTTCCCCGCCATGGTGGCCAACCGGAGATGAGGAATGGTGGCCTGAACTAGGACTACCTAAGGACCAGGGTCCACCTCCTTACAAGAAGCCCCATGATTTGAAGAAGGCTTGGAAAGTCAGTGTTCTCACTGCTGTGATTAAGCATATGTCACCTGATATTGCCAAGATTCGCAAGCTTGTTCGCCAGTCCAAGTGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGTTGGCTATTGTAAACCAGGAAGAAGCTTTGGCTAGGAAATTGTATCCCGATAAATGCCCACCTGTGTCGATTTGCGGGAGCGGATCTCTTTTGATCAGCGACACTAGTGATTATGATGTCGAAGGAGTTGAAGATGAGCCAAATGTTGAAGGAGAGGAAAATAAACCCCATGATCTCAACTTCTTTAATATGGGAGCTCCTGGATCTAGGGAGAGACTTATGATGCCACCTGTGGGTCCTCAGATTAAGGAAGAATTCATGGAGAACAATTCTGACTTCAATCAAAAGAGGAAGCAGATGACAGAAGAATCAAATACGATAATGAACCCAAGGATATATACTTGTGAGTATTCTCAATGCCCTTATAACAGTGCTCGTCTTGGGTTTCTTGACAGGAATTCAAGAAACAACCACCAGTTGAATTGCCCATTTAGGAGTGATTCTTCCCATATATTTAGCATGCCAAGCTTTCAAACTAACGAAGACAAATCGTCATCTCCCATTCCTCCATCCTTCAACCATCCTAAGGCACCTGCTCGGCTGATGAACCCGACTCCACCCTTCAGGGTATCAGGACTTGGACTTCCTGAAGATGGCCAGAAAATGATTTCTGACCTCTTGAGTTTCTACGATTCTAACCTTCAACAGGACAAACCTTTGAATTCGGGTAATCTCGACATGCCAGATGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTCGACGATAATTTGTATTCGCAAGCCGCAATGGTGGGAAATACCATGCCAATTCAGCAGCACGCTGATTTTTCTTCCAACAAACATCCATTTGACGAATACAAGGCAGCATTCGATACTCCATTCGGCATGTATCCCAACGATAACATCTCCGACTTCAGATTCGGTTCTCCATTTAACTTGGCATCAATCGATTATGCAGCAGCAGACACACAATTGCCCAAACAAGATACACCCTTGTGGTACCTTTGA 1848 45.29 MNTMGIFEDIGFCRNLEYFSAPPGEQETAQEHEAEAVLEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGADSSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNNDCNSVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGDEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNVEGEENKPHDLNFFNMGAPGSRERLMMPPVGPQIKEEFMENNSDFNQKRKQMTEESNTIMNPRIYTCEYSQCPYNSARLGFLDRNSRNNHQLNCPFRSDSSHIFSMPSFQTNEDKSSSPIPPSFNHPKAPARLMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLNSGNLDMPDDHNQQQQLPKFQLQVDDNLYSQAAMVGNTMPIQQHADFSSNKHPFDEYKAAFDTPFGMYPNDNISDFRFGSPFNLASIDYAAADTQLPKQDTPLWYL* 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3935880 3937727 + CsaV3_6G004610.1 Csa06g00461 532088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00461 615 MobiDBLite consensus disorder prediction 444 470 - -
Csa06g00461 615 MobiDBLite consensus disorder prediction 444 459 - -
Csa06g00461 615 SUPERFAMILY DNA-binding domain of EIN3-like 176 300 IPR023278 GO:0003700|GO:0005634
Csa06g00461 615 Coils Coil 35 69 - -
Csa06g00461 615 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 4 614 - -
Csa06g00461 615 Gene3D - 174 307 IPR023278 GO:0003700|GO:0005634
Csa06g00461 615 MobiDBLite consensus disorder prediction 22 45 - -
Csa06g00461 615 Gene3D - 82 162 IPR023278 GO:0003700|GO:0005634
Csa06g00461 615 Coils Coil 372 392 - -
Csa06g00461 615 MobiDBLite consensus disorder prediction 68 93 - -
Csa06g00461 615 Pfam Ethylene insensitive 3 50 297 IPR006957 GO:0005634
Csa06g00461 615 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 4 614 IPR006957 GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03099 Csa-Chr1:26941163 Csa06g00461 Csa-Chr6:3935880 0 dispersed
Csa01g03142 Csa-Chr1:27520569 Csa06g00461 Csa-Chr6:3935880 8.91E-122 dispersed
Csa04g00470 Csa-Chr4:2949871 Csa06g00461 Csa-Chr6:3935880 2.16E-112 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31921 PF04873 EIN3 5.90E-132 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00461 K14514 - csv:101214396 1240.33