Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00469 ATGGAGAAGTGCCCTGTTTATCCTCTTCGTTCCCTGTTGATGCTCCTATTCATTTTGAGTCTTTTTGTTCCAAGTATGCCTCTTCCAACGGAGACTCAAGCGTTGCTTCGTTTCAAAGAGAATCTCAAAGACCCGACAGGTTTTCTTAATTCTTGGATTGATTCTGAATCCCCTTGTGGATTCTCTGGGATTACTTGTGATCGGGCTTCCGGAAAAGTTGTAGAAATTTCCTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCATCCATTTCTGTTCTGCAATGGCTCACAACACTTTCATTGGCCTCAAATCATATTTCTGGGGAGCTTCCCAACCAACTAATCAACTGTAGCAATCTGAGAGTATTGAATCTCACTGATAATGAAATGGTTAAGAGGATTCCTGATCTTTCTCAGCTAAGAAAATTGGAGGTTCTAGATCTATCAATCAACTTCTTTTCAGGCCAATTCCCAATTTGGGTTGGAAATTTAACTGGATTGGTTTCTCTAGGACTTGGTCAAAATGAGTTTGAGGCTGGTGAGATACCAGAATCTATTGGAAATTTGAAGAATTTAACTTGGCTATATCTGGCAAATGCACAATTGAGAGGGGAAATACCAGAGTCTCTCTTTGAATTGAAGGCATTAAAGACATTGGATCTTTCAAGGAACGAGCTTTCTGGTAAAATCTCCAACTCAATATCCAAGTTGCAAAATCTGAATAAGCTTGAGCTGTTTGTTAACAAGTTGACTGGAGAAATTCCACCAGAGATTTCAAACCTTACCCTTCTACAAGAAATTGATATTTCTGCTAATAGTTTGTATGGCCAGTTGCCAGAAGAGGTTGGGAACTTAAGGAATTTGGTAGTTTTTCAGTTGTATGAAAACAACTTCTCTGGAAAACTTCCTGAAGGATTTGGAAATATGCAAAACCTTATTGCATTTTCAATCTATAGGAACAATTTTTCTGGAGACTTTCCAGTGAACTTTGGCAGATTTTCTCCGCTCAGCAGTATTGACATATCTGAGAACCAATTTTCAGGGAGCTTTCCTCAGTTCTTGTGTGAGAATAGGAAGTTGGAGTTCTTACTTGCTCTGGAAAATAGATTTTCTGGTGAGCTGCCATTTGCTTTAGCTGAGTGCAAATCACTGCAAAGATTCAGAATTAATAATAATCAAATGTCTGGCAGCATTCCAGATGGTGTATGGGCTCTTCCTAATGCAAAAATGATTGACTTTAGTGATAATGAATTCATTGGAATTATATCCCCAAACATTGGTTTATCTACCAGCTTGAGCCAGTTGGTTTTGCCAAACAATAAGTTTTCAGGTAACCTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAGAGGCTCTATTTGAGTAATAACGAGTTCAATGGAGAAATACCTTCTGAAATTGGTTTCCTGAGGCAACTTTCATCGTTCCACCTGGAAGTAAATTCATTGAATGGATCAATCCCATTAGAGATCGGTAACTGTGAAAGACTTGTGGACGTAAATTTTGCTCAAAACTCTCTCAGTGGTAGCATTCCATCTTCATTTTCATTAATCAGTTCTTTGAACTCCCTGAACCTATCAAGCAACAAACTTTCAGGTATAATCCCAGAATCTTTGGAGAAGATGAAACTAAGTTCGATTGATTTGTCGGGAAATCAGCTGTTCGGAAGAGTTCCATCCAGTCTTCTGGCAATGAGTGGAGACAAAGCATTTCTGGACAATAAAGAACTTTGTGTTGATGAAAACTACAGAGACAGGATAAATACCACCCTGGTAACTTGTACTGGAAAGAATAGTCATAAAGGGGTGCTTAATGATGAAATTCTATTTTTCAGCATCATAGTTTCCATCTTGGTTTGTGTATTAGCAGGACTAGCATTGGTAAGTTGTAATTGCTTGAAGATCAGTCAGACTGACCCAGAGGCCAGTTGGGAAGGGGACCGACAAGGAGCTCCACAATGGAAAATTGCATCATTCCATCAAGTGGAAATCGATGCAGATGAAATATGCAGCTTTGAAGAAGAAAATTTGATAGGAAGTGGAGGAACAGGAAAAGTTTATCGGTTGGATCTCAAGAAAAATGGCTATACAGTGGCTGTTAAACAACTCTGGAAAGGAGATGCAATGAAGGTTTTGGCTGCAGAAATGGAGATTCTGGGGAAGATAAGGCATAGAAACATCTTGAAGCTCTATGCCTGCTTAATGAGAGAAGGCTCAAGTTATCTAGTTTTTGAATACATGACCAATGGCAACCTGTATGAAGCACTTCAGAGACAGATCAAAAGTGGACAGCCTGAGTTGAACTGGTATCAGAGGTACAAGATTGCACTGGGAGCAGCAAGGGGGATTGCTTACTTGCACCATGATTGCTCACCACCTATAATTCATAGAGATATAAAATCAACAAATATACTTCTTGATGGAGATTATGAACCAAAAATTGCGGATTTTGGGGTTGCAAAAGTTGCAGATCAGTTTCAAAGTGCTTCTGAGCACAGCTCTCTTGCTGGCACCCATGGTTATATTGCTCCTGAGCTAGCATACACTCCAAAAGTTTCAGAAAAAAGCGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGAAGGAGACCAATAGAAGATGAATACGGAGAAGGAAAAGATATAGTCTACTGGATTTCAACACACCTTGATGACCGTGATCATGCCCTCAAGCTTCTAGACATCAGAGTTGCATCTGAAGCCATTCAAAATGACATGATTAAGGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCGATGAGAGAGGTAGTGAAGATGCTATCGGACGCTGATCCCTACTCTTCTTCAATGTCCCTGAACAACAGTTCAAATAAAAACATTAAGGATTTTGTTTAG 2931 39.54 MEKCPVYPLRSLLMLLFILSLFVPSMPLPTETQALLRFKENLKDPTGFLNSWIDSESPCGFSGITCDRASGKVVEISLENKSLSGEISPSISVLQWLTTLSLASNHISGELPNQLINCSNLRVLNLTDNEMVKRIPDLSQLRKLEVLDLSINFFSGQFPIWVGNLTGLVSLGLGQNEFEAGEIPESIGNLKNLTWLYLANAQLRGEIPESLFELKALKTLDLSRNELSGKISNSISKLQNLNKLELFVNKLTGEIPPEISNLTLLQEIDISANSLYGQLPEEVGNLRNLVVFQLYENNFSGKLPEGFGNMQNLIAFSIYRNNFSGDFPVNFGRFSPLSSIDISENQFSGSFPQFLCENRKLEFLLALENRFSGELPFALAECKSLQRFRINNNQMSGSIPDGVWALPNAKMIDFSDNEFIGIISPNIGLSTSLSQLVLPNNKFSGNLPSELGKLTNLERLYLSNNEFNGEIPSEIGFLRQLSSFHLEVNSLNGSIPLEIGNCERLVDVNFAQNSLSGSIPSSFSLISSLNSLNLSSNKLSGIIPESLEKMKLSSIDLSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRDRINTTLVTCTGKNSHKGVLNDEILFFSIIVSILVCVLAGLALVSCNCLKISQTDPEASWEGDRQGAPQWKIASFHQVEIDADEICSFEEENLIGSGGTGKVYRLDLKKNGYTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFEYMTNGNLYEALQRQIKSGQPELNWYQRYKIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDGDYEPKIADFGVAKVADQFQSASEHSSLAGTHGYIAPELAYTPKVSEKSDVYSYGVVLLELITGRRPIEDEYGEGKDIVYWISTHLDDRDHALKLLDIRVASEAIQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLSDADPYSSSMSLNNSSNKNIKDFV* 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3978872 3984098 - CsaV3_6G004690.1 Csa06g00469 532096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00469 976 SMART serkin_6 680 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00469 976 ProSiteProfiles Protein kinase domain profile. 680 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00469 976 Gene3D Transferase(Phosphotransferase) domain 1 755 974 - -
Csa06g00469 976 SMART LRR_typ_2 526 549 IPR003591 -
Csa06g00469 976 SMART LRR_typ_2 190 214 IPR003591 -
Csa06g00469 976 SMART LRR_typ_2 262 286 IPR003591 -
Csa06g00469 976 SMART LRR_typ_2 94 118 IPR003591 -
Csa06g00469 976 SMART LRR_typ_2 454 478 IPR003591 -
Csa06g00469 976 PRINTS Leucine-rich repeat signature 217 230 - -
Csa06g00469 976 PRINTS Leucine-rich repeat signature 526 539 - -
Csa06g00469 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Csa06g00469 976 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515
Csa06g00469 976 Pfam Leucine Rich repeat 95 110 IPR001611 GO:0005515
Csa06g00469 976 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 12 964 - -
Csa06g00469 976 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
Csa06g00469 976 Gene3D Ribonuclease Inhibitor 316 592 IPR032675 -
Csa06g00469 976 Pfam Protein kinase domain 680 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00469 976 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515
Csa06g00469 976 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Csa06g00469 976 SUPERFAMILY Protein kinase-like (PK-like) 677 952 IPR011009 -
Csa06g00469 976 Pfam Leucine rich repeat 508 562 IPR001611 GO:0005515
Csa06g00469 976 Gene3D Ribonuclease Inhibitor 239 312 IPR032675 -
Csa06g00469 976 Gene3D Ribonuclease Inhibitor 181 238 IPR032675 -
Csa06g00469 976 Gene3D Phosphorylase Kinase; domain 1 655 754 - -
Csa06g00469 976 SUPERFAMILY L domain-like 57 305 - -
Csa06g00469 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 964 - -
Csa06g00469 976 SUPERFAMILY RNI-like 249 569 - -
Csa06g00469 976 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515
Csa06g00469 976 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00469 Csa-Chr6:3978872 Csa07g00651 Csa-Chr7:4672994 0 dispersed
Csa06g00777 Csa-Chr6:6242040 Csa06g00469 Csa-Chr6:3978872 1.59E-50 dispersed
Csa06g00469 Csa-Chr6:3978872 Csa03g04526 Csa-Chr3:39463518 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78321 PF00069 Pkinase 3.80E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00469 - - csv:101215749 1871.67