Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00471 ATGCTCTTGAAGCCCTTCAACACCGTTGCCGTCGTATTCATGCTCGCTTTCGCATTCTTCATCATCTTTTTCACTGGCTTCCTCGAATTTCCGCTGGCATCCACTTCCATCGTACCGCCCACCGACGATCTGAGCCTCTCCCCACCTGAGTTTGCTTCTGACCCTTTCATTGATTTGATCGCAGCTTTCAAGAAATGGGACTCTCAGGTGGGTTGTGATCGGTTCCGGGAGAAAATTGGCGGCGGTTTGAGTAATGGGTCTTCATCGGTTTCGCTGCAGCAAGTCGGTGGCGACTCTAATTCGGAATGTGGCGGGCTGAAACTGAATCATGTTGCTGTTTTGGTGAAAGGGTGGACTTGGATTCCTGATAATTTAGATAATTTGTATTCGTGTTCTTGTGGATTGAGCTGTCTTTGGACTAAATCTTCTGTTCTTGCTGATAAACCCGACGCCTTGTTATTCGAAACCAGTACGCCTCCACGACAGAGGCGCAGAGGAGAACCTCTTCGCATATATATGGATCTTGAGGCTGGTCGGAAGCGCTCAGGTTTTGAGGATCTATTTGTTAGTTATCATGCAGAAGATGATGTTCAGGCAACTTATGCAGGAGCACTCTTTCACAACGGTCGAAACTATCACATATCTTCTTCTAAAAACAATGATACACTCGTTTATTGGTCGTCGTCTCGTTGTCTTCCCCAAAGGAACCAGCTTGCTAAGAAGGTTCTAAGTTTGCTACCCCACCATTCATTTGGCAAGTGCTTAAACAACGTAGGTGGACTCGACATGGCTCTTTCAATTTACCCTGAATGTGCAAATGATGCTAGTGCTACCCCAAAATGGTGGGATCACTTGCATTGTGCAATGTCTCACTACAAATTCGTTCTTGCAATCGAAAACACAATGACTGAGAGTTACGTAACTGAGAAGCTATTTTACGCGCTAGACTCTGGTTCCGTTCCAATCTATTTTGGGGCCCCTAATGTCTGGGACTTTGTTCCTCCACATTCTATCATTGATGGGTCTAAATTCAGCTCCTTAGAAGAGTTAGCTTCTTATGTAAAGCGACTTGCAGATGATCCAGTAGCTTATGCTGAGTACCATGCTTGGAGACGATGCCGTGCACTAGGTAACTATAGAAGGACCCGAGCTGTGAGCCTCGACACACTGCCATGTCGGGTGTGTGATGCTGTGAGCAGAAGGGGTGGTAGAAATGGTTGA 1221 46.36 MLLKPFNTVAVVFMLAFAFFIIFFTGFLEFPLASTSIVPPTDDLSLSPPEFASDPFIDLIAAFKKWDSQVGCDRFREKIGGGLSNGSSSVSLQQVGGDSNSECGGLKLNHVAVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALLFETSTPPRQRRRGEPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQATYAGALFHNGRNYHISSSKNNDTLVYWSSSRCLPQRNQLAKKVLSLLPHHSFGKCLNNVGGLDMALSIYPECANDASATPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLADDPVAYAEYHAWRRCRALGNYRRTRAVSLDTLPCRVCDAVSRRGGRNG* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4001625 4004331 + CsaV3_6G004710.1 Csa06g00471 532098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00471 406 PANTHER ALPHA-(1,4)-FUCOSYLTRANSFERASE 13 405 - -
Csa06g00471 406 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 13 405 IPR001503 GO:0006486|GO:0008417|GO:0016020
Csa06g00471 406 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 100 400 - -
Csa06g00471 406 PIRSF FucT_plant 1 406 IPR017177 -
Csa06g00471 406 Gene3D - 171 379 IPR038577 -
Csa06g00471 406 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 401 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00471 K14412 FUT13, FucTC; alpha-1,4-fucosyltransferase [EC:2.4.1.65] - csv:101216230 797.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01850 Csa-Chr3:14232868 Csa06g00471 Csa-Chr6:4001625 7.82E-14 dispersed
Csa06g00471 Csa-Chr6:4001625 Csa07g00757 Csa-Chr7:5313624 1.74E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02478 . 36 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 2.0e-154 542.7
Csa01g00565 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 2.3e-150 529.3
Csa05g02478 . 87 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.1e-163 571.2
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 6.9e-160 560.8
Csa05g02478 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.5e-137 486.5
Csa01g00565 . 101 582 Xyloglucan Fucosyltransferase1 AT1G14110 50.7 6.2e-131 464.5
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 63.4 1.3e-190 662.9
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 3.7e-182 634.8
Csa06g00471 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 70.1 1.1e-168 589.7
Csa05g02478 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.9e-183 638.6
Csa01g00565 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 2.9e-167 585.5
Csa05g02478 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 7.4e-200 693.7
Csa01g00565 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.2 4.9e-188 654.4
Csa04g00754 . 48 543 Xyloglucan Fucosyltransferase1 AT2G03220 51.2 1.7e-148 523.1
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 2.1e-153 539.3
Csa01g00565 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 1.3e-145 513.5
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.7 4.0e-147 518.5
Csa01g00565 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.3 7.4e-141 497.7
Csa05g02478 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 5.7e-149 524.6
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 5.5e-144 508.1
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.5e-188 656.0
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 2.3e-184 642.1
Csa05g02478 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.9e-183 638.6
Csa01g00565 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 2.9e-167 585.5
Csa05g02478 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 7.4e-200 693.7
Csa01g00565 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.2 4.9e-188 654.4
Csa04g00754 . 48 543 Xyloglucan Fucosyltransferase1 AT2G03220 51.2 1.7e-148 523.1
Csa05g02478 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.9e-183 638.6
Csa01g00565 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 2.9e-167 585.5
Csa05g02478 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 5.7e-149 524.6
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 5.5e-144 508.1
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.7 4.0e-147 518.5
Csa01g00565 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.3 7.4e-141 497.7
Csa05g02478 . 36 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 2.0e-154 542.7
Csa01g00565 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 2.3e-150 529.3
Csa05g02478 . 87 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.1e-163 571.2
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 6.9e-160 560.8
Csa05g02478 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.5e-137 486.5
Csa01g00565 . 101 582 Xyloglucan Fucosyltransferase1 AT1G14110 50.7 6.2e-131 464.5
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 2.1e-153 539.3
Csa01g00565 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 1.3e-145 513.5
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.5e-188 656.0
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 2.3e-184 642.1
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 63.4 1.3e-190 662.9
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 3.7e-182 634.8
Csa06g00471 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 70.1 1.1e-168 589.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010578 1 1 1 1 1 1 2 1 1 0 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00471 Csa_Chr06 FPKM 22.971449 23.011515 32.362656 33.36853 14.682598 14.369408 13.522924 38.832584 38.079323 36.17186