Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00471 ATGCTCTTGAAGCCCTTCAACACCGTTGCCGTCGTATTCATGCTCGCTTTCGCATTCTTCATCATCTTTTTCACTGGCTTCCTCGAATTTCCGCTGGCATCCACTTCCATCGTACCGCCCACCGACGATCTGAGCCTCTCCCCACCTGAGTTTGCTTCTGACCCTTTCATTGATTTGATCGCAGCTTTCAAGAAATGGGACTCTCAGGTGGGTTGTGATCGGTTCCGGGAGAAAATTGGCGGCGGTTTGAGTAATGGGTCTTCATCGGTTTCGCTGCAGCAAGTCGGTGGCGACTCTAATTCGGAATGTGGCGGGCTGAAACTGAATCATGTTGCTGTTTTGGTGAAAGGGTGGACTTGGATTCCTGATAATTTAGATAATTTGTATTCGTGTTCTTGTGGATTGAGCTGTCTTTGGACTAAATCTTCTGTTCTTGCTGATAAACCCGACGCCTTGTTATTCGAAACCAGTACGCCTCCACGACAGAGGCGCAGAGGAGAACCTCTTCGCATATATATGGATCTTGAGGCTGGTCGGAAGCGCTCAGGTTTTGAGGATCTATTTGTTAGTTATCATGCAGAAGATGATGTTCAGGCAACTTATGCAGGAGCACTCTTTCACAACGGTCGAAACTATCACATATCTTCTTCTAAAAACAATGATACACTCGTTTATTGGTCGTCGTCTCGTTGTCTTCCCCAAAGGAACCAGCTTGCTAAGAAGGTTCTAAGTTTGCTACCCCACCATTCATTTGGCAAGTGCTTAAACAACGTAGGTGGACTCGACATGGCTCTTTCAATTTACCCTGAATGTGCAAATGATGCTAGTGCTACCCCAAAATGGTGGGATCACTTGCATTGTGCAATGTCTCACTACAAATTCGTTCTTGCAATCGAAAACACAATGACTGAGAGTTACGTAACTGAGAAGCTATTTTACGCGCTAGACTCTGGTTCCGTTCCAATCTATTTTGGGGCCCCTAATGTCTGGGACTTTGTTCCTCCACATTCTATCATTGATGGGTCTAAATTCAGCTCCTTAGAAGAGTTAGCTTCTTATGTAAAGCGACTTGCAGATGATCCAGTAGCTTATGCTGAGTACCATGCTTGGAGACGATGCCGTGCACTAGGTAACTATAGAAGGACCCGAGCTGTGAGCCTCGACACACTGCCATGTCGGGTGTGTGATGCTGTGAGCAGAAGGGGTGGTAGAAATGGTTGA 1221 46.36 MLLKPFNTVAVVFMLAFAFFIIFFTGFLEFPLASTSIVPPTDDLSLSPPEFASDPFIDLIAAFKKWDSQVGCDRFREKIGGGLSNGSSSVSLQQVGGDSNSECGGLKLNHVAVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALLFETSTPPRQRRRGEPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQATYAGALFHNGRNYHISSSKNNDTLVYWSSSRCLPQRNQLAKKVLSLLPHHSFGKCLNNVGGLDMALSIYPECANDASATPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLADDPVAYAEYHAWRRCRALGNYRRTRAVSLDTLPCRVCDAVSRRGGRNG* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4001625 4004331 + CsaV3_6G004710.1 Csa06g00471 532098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00471 406 PANTHER ALPHA-(1,4)-FUCOSYLTRANSFERASE 13 405 - -
Csa06g00471 406 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 13 405 IPR001503 GO:0006486|GO:0008417|GO:0016020
Csa06g00471 406 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 100 400 - -
Csa06g00471 406 PIRSF FucT_plant 1 406 IPR017177 -
Csa06g00471 406 Gene3D - 171 379 IPR038577 -
Csa06g00471 406 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 401 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01850 Csa-Chr3:14232868 Csa06g00471 Csa-Chr6:4001625 7.82E-14 dispersed
Csa06g00471 Csa-Chr6:4001625 Csa07g00757 Csa-Chr7:5313624 1.74E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00471 K14412 - csv:101216230 797.349