Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00488 ATGGCGGCTACAGTTCCGGCTCCGGCGACGGCCGCTACAGTTCAAACGGCGGTGATTCCTCCTCCGACGGTCGCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCTTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTATCCATTAGGGTTTGCAGGGATCAGACACGCAGACAATCGCTTGGATATGCTTATGTTAATTTTAGCAGCCATCAGGATGCTGTCAATGCCATGGAGCATTTGAATTTCACGCCTGTTAATGGGAAGCCTATCAGGATTATGATATCTAATCGAGATCCTAGCATTCGAAAAAGTGGATATGCAAATGTTTTTATCAAAAATCTGGACTTATCAATTGATAACAAGGCGTTACGTGATACATTTGCTGCTTTTGGTACTGTCCTTTCTTGTAAAGTTGCTGTAGATAGCAATGGACAGTCAAAAGGTTACGGATTTGTGCAATTTGAAAGTGAGGAATCAGCTGAAATTTCCATAGAAAAGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGGCATTTTATTCGACACCAAGAAAGGATTCGAGCAAATGGATCACAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACAGATGATGATCTAAAAAATCTTTTTGCTCCACATGGTACCATTACTAGTGCAATTGTCATGACTGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTCCAGAACACAGACTCTGCTGCTGCTGCAGTTGAAAAGTTGGACGGTACCGTCCTTGGAGATGACAAGACTTTGTACGTAGGTAGGGCTCAAAGGAAAGCAGAAAGGGAGGCTGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTATATAAAAAATCTTGATGACCATATTGATGATGAGAAACTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAACATGGACTGAGCAAAGGATCTGGTTTTGTTGCCTTTTCCTCACCAGATGAAGCAACCAAAGCCTTAAATGAAATGAATGGAAAGATGAAAGGAAGGAAGCCTCTCTATGTGGCTGTTGCCCAGCGCAAGGAAGAACGAAAGGCTCGATTGCAGGCACAATTTGCTCAGATCCGAGCAGCTGGTGGAATATCATCTTTGCCTTCTGGAATTCCAGGATTTCATCCGGGGGCAGCACGAGTTTCACCTCAGCAAATGTATTATGGTCAGGGAAACCCTGGGCTAGCGCCCCCGCAGCCTGCTGGATATGGTTTCCAGCCTCAACTCATGAGTGGGATGCGACCTGGTATGGGCCCGAACTTCCTCATGCCATACCAATTTCAAAGGCAAGGACAGCCCGGGCCACGCTTAGGGGTGAGGCGAGGTGGAAATTCACAACCTTTACCCCAGCAGCAGTTACCACTCCGTGGCTACGGACAAAGCTTTAGATACATGAACAATGCACGAAATGGATTAGAGACGCCTGTCCTGCCCCAAGGTCTTGTTAGTCCGATGATGCCTCTAGCTTTTGACGGTTCTGGAGTGTCTAGCCCTCCCAATGACATCCAGCGATCAAGGGCCGTACCTACCTCAACACTTGCTTCTGCGTTAGCTTCCGCTTCACTAGAAAACCAACGTGTGATGCTGGGCGAGCAGTTGTATCCACTTGTGGAACGTCTCGAGCCAAGTCATGCTGCAAAGGTTACTGGAATGTTGCTGGAGATGGACCAACCGGAGGTACTTCATCTAATCGAGTCACCCGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTTCGCAAAGCTTCGTCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTGACCCTGACCAAATGA 1959 45.99 MAATVPAPATAATVQTAVIPPPTVAVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVSPQQMYYGQGNPGLAPPQPAGYGFQPQLMSGMRPGMGPNFLMPYQFQRQGQPGPRLGVRRGGNSQPLPQQQLPLRGYGQSFRYMNNARNGLETPVLPQGLVSPMMPLAFDGSGVSSPPNDIQRSRAVPTSTLASALASASLENQRVMLGEQLYPLVERLEPSHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALTLTK* 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4128153 4132229 + CsaV3_6G004880.1 Csa06g00488 532115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00488 652 Gene3D - 124 197 IPR012677 -
Csa06g00488 652 Pfam Poly-adenylate binding protein, unique domain 568 632 IPR002004 GO:0003723
Csa06g00488 652 PANTHER POLYADENYLATE-BINDING PROTEIN 35 640 - -
Csa06g00488 652 PANTHER RNA BINDING PROTEIN 35 640 - -
Csa06g00488 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Csa06g00488 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Csa06g00488 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Csa06g00488 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 280 IPR000504 GO:0003723
Csa06g00488 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Csa06g00488 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 560 637 IPR002004 GO:0003723
Csa06g00488 652 CDD RRM1_I_PABPs 36 115 - -
Csa06g00488 652 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676
Csa06g00488 652 SUPERFAMILY RNA-binding domain, RBD 212 398 IPR035979 GO:0003676
Csa06g00488 652 PRINTS Paraneoplastic encephalomyelitis antigen family signature 213 228 IPR002343 GO:0003723|GO:1990904
Csa06g00488 652 PRINTS Paraneoplastic encephalomyelitis antigen family signature 304 321 IPR002343 GO:0003723|GO:1990904
Csa06g00488 652 PRINTS Paraneoplastic encephalomyelitis antigen family signature 322 337 IPR002343 GO:0003723|GO:1990904
Csa06g00488 652 PRINTS Paraneoplastic encephalomyelitis antigen family signature 337 349 IPR002343 GO:0003723|GO:1990904
Csa06g00488 652 SUPERFAMILY PABC (PABP) domain 496 639 IPR036053 GO:0003723
Csa06g00488 652 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 35 633 IPR006515 GO:0003723
Csa06g00488 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Csa06g00488 652 SMART poly_2 572 635 IPR002004 GO:0003723
Csa06g00488 652 SMART rrm1_1 124 196 IPR000504 GO:0003723
Csa06g00488 652 SMART rrm1_1 214 287 IPR000504 GO:0003723
Csa06g00488 652 SMART rrm1_1 318 390 IPR000504 GO:0003723
Csa06g00488 652 SMART rrm1_1 36 109 IPR000504 GO:0003723
Csa06g00488 652 Gene3D - 556 637 - -
Csa06g00488 652 Gene3D - 33 123 IPR012677 -
Csa06g00488 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723
Csa06g00488 652 Gene3D - 199 300 IPR012677 -
Csa06g00488 652 Gene3D - 301 406 IPR012677 -
Csa06g00488 652 SMART rrm2_1 318 389 IPR003954 GO:0003676
Csa06g00488 652 SMART rrm2_1 214 286 IPR003954 GO:0003676
Csa06g00488 652 SMART rrm2_1 124 196 IPR003954 GO:0003676
Csa06g00488 652 SMART rrm2_1 36 109 IPR003954 GO:0003676
Csa06g00488 652 CDD RRM3_I_PABPs 212 292 - -
Csa06g00488 652 CDD RRM4_I_PABPs 316 394 - -
Csa06g00488 652 CDD RRM2_I_PABPs 121 197 IPR045305 -
Csa06g00488 652 Coils Coil 286 306 - -
Csa06g00488 652 Coils Coil 392 412 - -
Csa06g00488 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01837 Csa-Chr3:14099253 Csa06g00488 Csa-Chr6:4128153 0 dispersed
Csa03g03337 Csa-Chr3:30272598 Csa06g00488 Csa-Chr6:4128153 4.54E-138 dispersed
Csa06g00488 Csa-Chr6:4128153 Csa02g01195 Csa-Chr2:11747886 8.16E-13 dispersed
Csa06g00488 Csa-Chr6:4128153 Csa07g00747 Csa-Chr7:5262014 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00488 K13126 - csv:101219081 1214.91