Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00494 ATGGAAGGAGTTGCCCATGGATTTCTTGAACGATGGCCATTGTATGTTGTAGTTATGTGCTTAAGCTTAATATTGGGTTGTTCATCAGTGGCTTCTCTTTCTCCTGATGGAGAAGCGCTTCTCTCTCTCATTGCTGCTACTGGTTCTTCTGTATCATCGTCCTCTTCTGTTCTTGCGACTTGGAATCCATCTAGCCAAAACCCTTGTGCTTGGGAAGGAATCACTTGCTCTCCTCAGAACAGAGTCATTTCACTCTCTCTCCCTAAAACATTCTTAAACCTCTCGTTTTTGCCTCCTGAGTTGTCCTCTCTCTCTTCTTTGCAACTTCTTAATCTATCATCCACCAATGTATCTGGTTCAATCCCTGCTTCTTTCGGCCTACTCACCCATCTTCGCTTGTTGGACCTTTCTTCCAACAATCTCTATGGTCCTATTCCTCCCCAGCTTGGTTCCCTTTCTTCACTTCAATTCCTTTTCCTTAATTCAAATAGGCTGTCCGGTAAGATTCCTCCTCAGCTTGCTAATCTGACTTCACTGCAAAGTCTCTGTCTCCAAGATAATCAATTTAACGGGTCGATTCCGTTGCAGTTTGGTTCTTTGTTGTCGCTCCAAGAGTTCCGAATAGGAGGAAATCCATATCTTTCTGGAGACATTCCACCAGAATTAGGGCTGCTTACTAATCTCACTACATTTGGGGCAGCGGCTACTGCTCTATCTGGGGCTATACCCTCTACATTTGGGAACCTAATCAACCTCCAAACTTTGTCACTCTATAATACTGAGATGTCTGGTTCAATACCTCCCGAGTTGGGACTTTGTTCTGAGCTAAGGGATTTGTATTTACACATGAACAAGTTGACTGGTAATATTCCTCCACAGCTGGGTAAGTTGCAGAAGCTTACTAGTTTGTTTCTATGGGGTAATGGTCTATCAGGGGCCATACCGTCTGAAATTTCAAATTGTTCGGCTCTTGTTGTTTTTGATGCTTCAGAGAATGATCTTTCTGGTGAAATCCCAAGTGATATGGGGAAATTAGTTGTTCTGGAACAGTTTCATATATCTGACAATTCAATCTCGGGTTCGATCCCATGGCAGTTGGGCAACTGCACAAGCCTAACTGCCCTTCAGCTTGATAATAATCAATTATCAGGTGTAATTCCTTCACAGCTTGGCAATTTGAAATCCCTGCAAAGTTTTTTCTTATGGGGCAATTCTGTATCAGGAACCGTACCATCTTCCTTTGGCAACTGCACTGAGTTATATGCCCTTGATCTTTCAAGAAACAAGCTCACTGGGAGTATCCCAGAAGAAATTTTTGGCTTGAAGAAGTTAAGCAAGCTATTGCTCCTTGGTAATTCTTTAACCGGGGGGTTGCCTCGAAGTGTTGCAAATTGTCAATCATTGGTGAGGTTAAGGCTTGGAGAAAACCAGCTTTCAGGCCAAATTCCAAAGGAGGTAGGCCGGTTGCAAAATCTTGTCTTTCTTGACTTGTATATGAATCATTTTTCGGGTGGTCTTCCGTCCGAGATTGCTAACATTACAGTTCTTGAGCTACTTGATGTGCATAATAATTATATAACTGGGGAAATTCCTCCCCAGCTTGGAGAATTGGTGAACTTGGAGCAGCTTGATCTCAGTCGTAACAGCTTCACCGGTGAAATTCCTCAGAGCTTTGGAAACTTCAGTTATTTGAATAAACTTATTCTTAATAATAACCTACTGACAGGATCAATCCCAAAGTCTATTAAAAACCTGGAGAAACTAACTCTACTTGATTTGAGTTGCAACAGTCTCTCTGGCACTATACCACCGGAAATTGGTTATATGAAGAGCTTGTCTATCAGTCTCGACTTGAGTTCAAACGGGATAAGTGGAGAAATTCCTGAGACGATGTCCAGTTTGACACAGTTACAATCGCTTGATCTTTCCCACAACATGCTTTCTGGAAATATTAAGGTGTTGGGTCTCTTGACTAGTCTCACGTCCCTTAATATCTCCTACAACAATTTCTCAGGTCCCATGCCTGTAACACCATTTTTTAGAACCCTATCAGAAGATTCGTATTATCAAAACCTGAATCTCTGTGAATCACTAGATGGGTATACTTGCTCCTCGAGTTCAATGCATCGAAATGGGTTGAAGTCTGCAAAAGCTGCTGCTTTAATCTCCATCATTCTTGCTGCAGTTGTAGTCATACTTTTTGCTTTGTGGATTCTAGTTTCACGAAATCGAAAGTACATGGAAGAGAAACATTCTGGGACATTGTCCTCTGCATCGGCTGCCGAGGATTTCTCTTATCCTTGGACCTTCATCCCGTTTCAGAAGCTCAACTTTACCATAGATAACATCTTGGAATCCATGAAAGATGAAAACATAATTGGAAAAGGTTGCTCCGGGGTTGTTTATAAAGCAGATATGCCCAATGGTGAATTAGTTGCTGTGAAGAAACTTTGGAAAACAAAGCAAGATGAAGAAGCAGTTGACTCTTGTGCTGCAGAGATTCAAATTCTTGGGCATATTCGACATCGTAACATAGTGAAGCTCGTAGGTTATTGTTCCAATAGAAGTGTCAAGATCCTTCTCTACAACTACATTTCAAATGGTAATCTGCAACAACTCTTGCAAGGAAACAGAAATCTAGACTGGGAGACAAGGTATAAGATTGCGGTCGGGACGGCTCAGGGTCTAGCTTATCTTCATCATGATTGTGTGCCTGCAATTCTTCACAGAGATGTCAAGTGCAATAACATACTTCTAGACTCAAAGTTTGAAGCATATTTAGCAGATTTTGGCCTGGCAAAGTTGATGAACACTCCAAATTATCACCATGCGATTTCAAGAGTAGCCGGCTCATACGGTTATATCGCTCCAGAGTACGGATATACCATGAACATAACCGAGAAGAGTGATGTGTATAGCTATGGAGTTGTTTTACTAGAGATACTAAGTGGGCGTAGCGCAATTGAAACACAAGTTGGAGATGGCCTTCACATTGTTGAGTGGGTGAAGAAGAAGATGGCGAGTTTCGAACCCGCCATAACGATCCTTGATACAAAGCTACAGAGTTTACCAGATCAGATGGTGCAAGAAATGCTTCAAACTCTAGGAATAGCAATGTTTTGTGTGAACTCTTCTCCAGCTGAAAGGCCAACAATGAAGGAAGTGGTAGCATTATTGATGGAGGTGAAGAGTCCTCCAGAAGAATGGGGAAAAACTTCCCAACCTCTAATAAAGCAGTCCTCAACTATAAGTTGA 3255 41.9 MEGVAHGFLERWPLYVVVMCLSLILGCSSVASLSPDGEALLSLIAATGSSVSSSSSVLATWNPSSQNPCAWEGITCSPQNRVISLSLPKTFLNLSFLPPELSSLSSLQLLNLSSTNVSGSIPASFGLLTHLRLLDLSSNNLYGPIPPQLGSLSSLQFLFLNSNRLSGKIPPQLANLTSLQSLCLQDNQFNGSIPLQFGSLLSLQEFRIGGNPYLSGDIPPELGLLTNLTTFGAAATALSGAIPSTFGNLINLQTLSLYNTEMSGSIPPELGLCSELRDLYLHMNKLTGNIPPQLGKLQKLTSLFLWGNGLSGAIPSEISNCSALVVFDASENDLSGEIPSDMGKLVVLEQFHISDNSISGSIPWQLGNCTSLTALQLDNNQLSGVIPSQLGNLKSLQSFFLWGNSVSGTVPSSFGNCTELYALDLSRNKLTGSIPEEIFGLKKLSKLLLLGNSLTGGLPRSVANCQSLVRLRLGENQLSGQIPKEVGRLQNLVFLDLYMNHFSGGLPSEIANITVLELLDVHNNYITGEIPPQLGELVNLEQLDLSRNSFTGEIPQSFGNFSYLNKLILNNNLLTGSIPKSIKNLEKLTLLDLSCNSLSGTIPPEIGYMKSLSISLDLSSNGISGEIPETMSSLTQLQSLDLSHNMLSGNIKVLGLLTSLTSLNISYNNFSGPMPVTPFFRTLSEDSYYQNLNLCESLDGYTCSSSSMHRNGLKSAKAAALISIILAAVVVILFALWILVSRNRKYMEEKHSGTLSSASAAEDFSYPWTFIPFQKLNFTIDNILESMKDENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQDEEAVDSCAAEIQILGHIRHRNIVKLVGYCSNRSVKILLYNYISNGNLQQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNTPNYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAIETQVGDGLHIVEWVKKKMASFEPAITILDTKLQSLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQSSTIS* 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4153606 4158120 - CsaV3_6G004940.1 Csa06g00494 532121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00494 1084 PANTHER - 26 1080 - -
Csa06g00494 1084 Gene3D Ribonuclease Inhibitor 579 704 IPR032675 -
Csa06g00494 1084 Gene3D Ribonuclease Inhibitor 485 578 IPR032675 -
Csa06g00494 1084 SUPERFAMILY Protein kinase-like (PK-like) 771 1060 IPR011009 -
Csa06g00494 1084 SMART LRR_typ_2 634 659 IPR003591 -
Csa06g00494 1084 SMART LRR_typ_2 176 200 IPR003591 -
Csa06g00494 1084 SMART LRR_typ_2 249 273 IPR003591 -
Csa06g00494 1084 SMART LRR_typ_2 393 416 IPR003591 -
Csa06g00494 1084 SMART LRR_typ_2 297 321 IPR003591 -
Csa06g00494 1084 SMART LRR_typ_2 585 609 IPR003591 -
Csa06g00494 1084 SMART LRR_typ_2 417 441 IPR003591 -
Csa06g00494 1084 SMART LRR_typ_2 128 151 IPR003591 -
Csa06g00494 1084 SMART LRR_typ_2 104 127 IPR003591 -
Csa06g00494 1084 SMART LRR_typ_2 537 560 IPR003591 -
Csa06g00494 1084 SMART LRR_typ_2 152 175 IPR003591 -
Csa06g00494 1084 ProSiteProfiles Protein kinase domain profile. 787 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00494 1084 Gene3D Ribonuclease Inhibitor 289 386 IPR032675 -
Csa06g00494 1084 Gene3D Ribonuclease Inhibitor 387 484 IPR032675 -
Csa06g00494 1084 PRINTS Leucine-rich repeat signature 420 433 - -
Csa06g00494 1084 PRINTS Leucine-rich repeat signature 634 647 - -
Csa06g00494 1084 PANTHER UNNAMED PRODUCT 26 1080 - -
Csa06g00494 1084 SUPERFAMILY RNI-like 110 501 - -
Csa06g00494 1084 ProSiteProfiles Leucine-rich repeat profile. 636 658 IPR001611 GO:0005515
Csa06g00494 1084 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Csa06g00494 1084 SUPERFAMILY L domain-like 444 691 - -
Csa06g00494 1084 Pfam Protein kinase domain 789 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00494 1084 Pfam Leucine rich repeat 539 598 IPR001611 GO:0005515
Csa06g00494 1084 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515
Csa06g00494 1084 Gene3D Phosphorylase Kinase; domain 1 754 864 - -
Csa06g00494 1084 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672|GO:0006468
Csa06g00494 1084 SMART serkin_6 787 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00494 1084 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524
Csa06g00494 1084 Gene3D Transferase(Phosphotransferase) domain 1 865 1074 - -
Csa06g00494 1084 Gene3D Ribonuclease Inhibitor 194 288 IPR032675 -
Csa06g00494 1084 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01135 Csa-Chr3:8937734 Csa06g00494 Csa-Chr6:4153606 0 dispersed
Csa06g00494 Csa-Chr6:4153606 Csa07g01394 Csa-Chr7:14158985 0 dispersed
Csa06g00494 Csa-Chr6:4153606 Csa03g01130 Csa-Chr3:8912410 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78323 PF00069 Pkinase 1.20E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00494 - - csv:101212866 2009.57