Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00522 ATGTCATTCCGTAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTGTCAAGACGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCACCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAATGCCCTGAATTATCTGGGAAGATTACCTTCCCAATTGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTTTGTCTGAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCAGACGATATATCAAGATCGAGCAACGGTTATATTGGAAAGCTAAGATCAAACTTTCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATTCCAACCCTAGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCAAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCGTATGAGTTGAATGTATTAGGTACAAGGGGGCCTCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCAGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCTCTTGAAGACTCGTTTCGTAGTATCTCATTCTCCAAGTCGATCGACCATTCCACTGAGTTCAGCAGTTCCCGTTTCTCCGATGTTGCGGGCATGCTGGTTGATGAAGATGGCGAGGGGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTACAGTGTTGGTGTCTCAACTTTCGTGGGAGGGTGACGGTTGCATCTGTAAAGAACTTTCAACTGATTGCTGCAACCTCACCTGCTGCCGAAGCCCCCGTACCGTCGCAGCCACCTCCCCAGCCCGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTTGGCAAGGACATGTTCACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTAAGCAGCTTTGACACTAAATTGGCATGTGAATAG 1299 46.81 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKCPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4410794 4415111 - CsaV3_6G005220.1 Csa06g00522 532149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00522 432 Gene3D - 48 104 - -
Csa06g00522 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Csa06g00522 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Csa06g00522 432 Pfam F-box domain 53 99 IPR001810 GO:0005515
Csa06g00522 432 Pfam Tub family 114 427 IPR000007 -
Csa06g00522 432 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 432 - -
Csa06g00522 432 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Csa06g00522 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Csa06g00522 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Csa06g00522 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Csa06g00522 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Csa06g00522 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Csa06g00522 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Csa06g00522 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Csa06g00522 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Csa06g00522 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Csa06g00522 432 PANTHER TUBBY-RELATED 1 432 - -
Csa06g00522 432 MobiDBLite consensus disorder prediction 368 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00806 Csa-Chr4:5646770 Csa06g00522 Csa-Chr6:4410794 3.15E-124 dispersed
Csa06g00404 Csa-Chr6:3531561 Csa06g00522 Csa-Chr6:4410794 0 dispersed
Csa06g00522 Csa-Chr6:4410794 Csa06g00572 Csa-Chr6:4906059 3.25E-150 dispersed
Csa06g00522 Csa-Chr6:4410794 Csa03g01411 Csa-Chr3:10605878 5.48E-151 transposed
Csa06g00522 Csa-Chr6:4410794 Csa04g00567 Csa-Chr4:3753112 7.41E-152 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31926 PF01167 Tub 1.10E-115 CL0395 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00522 K19600 - csv:101203074 862.448