Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00530 | ATGTTTGAGCTTTTTACATTTCTTCAAAGCAATCTACTTTGGAGATCCAAGCAAAGGAATTCGACTACTCAAAACGCGCACAATGGCTACGCGCGCGCAGTACTCGGCGCCAACGACGGCCTTGTCTCGACCGCGTCGCTCATGATGGGAGTTGGAGCTGTCAAACAAGACATCAAGGCCATGATCCTCACCGGTTTCGCCGGTCTAGTAGCTGGTGCGTGTAGTATGGCGATTGGCGAATTTGTGTCTGTTTACTCTCAACTAGACATCGAAATGGCTCAAATAAAAAGAGAGAAATTACAAAGATCAAATAATATGGAAGGAGGAGTAGTACAAGGGCAAGACAGCAAAGATAAAGAAAAGCTACCAAATCCACTCCAAGCAGCTGCAGCCTCAGCCTTGGCCTTCTCTCTTGGAGCAATGGTCCCATTGTTGGCTGCTTCCTTTATAAGAGAATATAAAGTAAGACTCGCAGTGGTCGTGGCATCGGTGACGTTAGCTCTCGCCGTGTTCGGGTGGCTAGGTGCCATTCTTGGAAAAGCATCACCAATCAAATCAGCTGCTAGAGTGTTGATCGGAGGTTGGTTAGCTATGGCTATAACCTTTGGCTTGACGAAGCTAATCGGAGCGAGTGGACTCTAG | 642 | 47.66 | MFELFTFLQSNLLWRSKQRNSTTQNAHNGYARAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEMAQIKREKLQRSNNMEGGVVQGQDSKDKEKLPNPLQAAAASALAFSLGAMVPLLAASFIREYKVRLAVVVASVTLALAVFGWLGAILGKASPIKSAARVLIGGWLAMAITFGLTKLIGASGL* | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4488732 | 4490754 | - | CsaV3_6G005300.1 | Csa06g00530 | 532157 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00530 | 213 | Pfam | VIT family | 32 | 106 | IPR008217 | GO:0005384|GO:0030026 | |
Csa06g00530 | 213 | Pfam | VIT family | 117 | 205 | IPR008217 | GO:0005384|GO:0030026 | |
Csa06g00530 | 213 | PANTHER | FE(2+)/MN(2+) TRANSPORTER PCL1 | 32 | 210 | IPR008217 | GO:0005384|GO:0030026 | |
Csa06g00530 | 213 | PANTHER | VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED | 32 | 210 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g00530 | Csa-Chr6:4488732 | Csa05g01975 | Csa-Chr5:23124197 | 9.66E-06 | dispersed | |
Csa05g01129 | Csa-Chr5:11523469 | Csa06g00530 | Csa-Chr6:4488732 | 3.30E-08 | transposed | |
Csa07g01425 | Csa-Chr7:14477401 | Csa06g00530 | Csa-Chr6:4488732 | 2.66E-64 | transposed | |
Csa06g02351 | Csa-Chr6:21042541 | Csa06g00530 | Csa-Chr6:4488732 | 2.04E-75 | transposed | |
Csa01g01661 | Csa-Chr1:12403654 | Csa06g00530 | Csa-Chr6:4488732 | 2.83E-154 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00530 | K22736 | - | csv:101204048 | 324.709 |