Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00530 ATGTTTGAGCTTTTTACATTTCTTCAAAGCAATCTACTTTGGAGATCCAAGCAAAGGAATTCGACTACTCAAAACGCGCACAATGGCTACGCGCGCGCAGTACTCGGCGCCAACGACGGCCTTGTCTCGACCGCGTCGCTCATGATGGGAGTTGGAGCTGTCAAACAAGACATCAAGGCCATGATCCTCACCGGTTTCGCCGGTCTAGTAGCTGGTGCGTGTAGTATGGCGATTGGCGAATTTGTGTCTGTTTACTCTCAACTAGACATCGAAATGGCTCAAATAAAAAGAGAGAAATTACAAAGATCAAATAATATGGAAGGAGGAGTAGTACAAGGGCAAGACAGCAAAGATAAAGAAAAGCTACCAAATCCACTCCAAGCAGCTGCAGCCTCAGCCTTGGCCTTCTCTCTTGGAGCAATGGTCCCATTGTTGGCTGCTTCCTTTATAAGAGAATATAAAGTAAGACTCGCAGTGGTCGTGGCATCGGTGACGTTAGCTCTCGCCGTGTTCGGGTGGCTAGGTGCCATTCTTGGAAAAGCATCACCAATCAAATCAGCTGCTAGAGTGTTGATCGGAGGTTGGTTAGCTATGGCTATAACCTTTGGCTTGACGAAGCTAATCGGAGCGAGTGGACTCTAG 642 47.66 MFELFTFLQSNLLWRSKQRNSTTQNAHNGYARAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEMAQIKREKLQRSNNMEGGVVQGQDSKDKEKLPNPLQAAAASALAFSLGAMVPLLAASFIREYKVRLAVVVASVTLALAVFGWLGAILGKASPIKSAARVLIGGWLAMAITFGLTKLIGASGL* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4488732 4490754 - CsaV3_6G005300.1 Csa06g00530 532157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00530 213 Pfam VIT family 32 106 IPR008217 GO:0005384|GO:0030026
Csa06g00530 213 Pfam VIT family 117 205 IPR008217 GO:0005384|GO:0030026
Csa06g00530 213 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 32 210 IPR008217 GO:0005384|GO:0030026
Csa06g00530 213 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 32 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00530 Csa-Chr6:4488732 Csa05g01975 Csa-Chr5:23124197 9.66E-06 dispersed
Csa05g01129 Csa-Chr5:11523469 Csa06g00530 Csa-Chr6:4488732 3.30E-08 transposed
Csa07g01425 Csa-Chr7:14477401 Csa06g00530 Csa-Chr6:4488732 2.66E-64 transposed
Csa06g02351 Csa-Chr6:21042541 Csa06g00530 Csa-Chr6:4488732 2.04E-75 transposed
Csa01g01661 Csa-Chr1:12403654 Csa06g00530 Csa-Chr6:4488732 2.83E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00530 K22736 - csv:101204048 324.709