Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00532 | ATGGATGGGTCTTTGACTTCCTCGTTTGAAGTTGATTCTTCCAAGAAGGCTATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCGAATAGACAATCTGCTGCACGATCCAAGGAGAGAAAAATACGTTACACTAATGAATTAGAGAAGAAGGTGCAAATGCTTCAATCAGAAGCGACTTCCCTTTCTGCTCAGGTCACTGTGTTACAGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGATTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACATTGAGGGAGGAAGTACAGCGACTTAAGATAGCCGCTGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATGGGAGGAGGGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATTTCTTCAATTTGGCAACTCCCAGAATCATCAACAGCCACAGCTGCTTCACATGTCTCAGCCTGATGCTCGAGGAGGGTCTCCACCGTCCCAGCTTCCAGGAGCTTAA | 564 | 47.34 | MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLREEVQRLKIAAAQLPVANGNSFNMGGGLPPQFPPLQTSFLQFGNSQNHQQPQLLHMSQPDARGGSPPSQLPGA* | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4513114 | 4514362 | + | CsaV3_6G005320.1 | Csa06g00532 | 532159 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00532 | 187 | Pfam | bZIP transcription factor | 32 | 88 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g00532 | 187 | PANTHER | BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED | 1 | 172 | - | - | |
Csa06g00532 | 187 | MobiDBLite | consensus disorder prediction | 156 | 187 | - | - | |
Csa06g00532 | 187 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 1 | 172 | - | - | |
Csa06g00532 | 187 | SUPERFAMILY | Leucine zipper domain | 32 | 84 | IPR046347 | GO:0003700|GO:0006355 | |
Csa06g00532 | 187 | SMART | brlzneu | 28 | 92 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g00532 | 187 | MobiDBLite | consensus disorder prediction | 156 | 170 | - | - | |
Csa06g00532 | 187 | Gene3D | - | 30 | 92 | - | - | |
Csa06g00532 | 187 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 30 | 93 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g00532 | 187 | Coils | Coil | 107 | 127 | - | - | |
Csa06g00532 | 187 | CDD | bZIP_plant_RF2 | 33 | 82 | IPR044759 | GO:0003700|GO:0006355 | |
Csa06g00532 | 187 | Coils | Coil | 55 | 75 | - | - | |
Csa06g00532 | 187 | Coils | Coil | 83 | 103 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g00532 | Csa-Chr6:4513114 | Csa07g00052 | Csa-Chr7:584738 | 2.72E-51 | dispersed | |
Csa03g01585 | Csa-Chr3:11760363 | Csa06g00532 | Csa-Chr6:4513114 | 1.66E-53 | transposed | |
Csa03g01596 | Csa-Chr3:11855707 | Csa06g00532 | Csa-Chr6:4513114 | 2.27E-51 | transposed | |
Csa05g00893 | Csa-Chr5:6934222 | Csa06g00532 | Csa-Chr6:4513114 | 8.70E-59 | transposed | |
Csa06g01114 | Csa-Chr6:9232616 | Csa06g00532 | Csa-Chr6:4513114 | 3.74E-57 | transposed | |
Csa07g01423 | Csa-Chr7:14447945 | Csa06g00532 | Csa-Chr6:4513114 | 3.81E-70 | transposed | |
Csa01g01658 | Csa-Chr1:12380301 | Csa06g00532 | Csa-Chr6:4513114 | 3.19E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31928 | PF00170 | bZIP_1 | 1.10E-07 | CL0018 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00532 | K20557 | - | csv:101215277 | 358.607 |