Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00532 ATGGATGGGTCTTTGACTTCCTCGTTTGAAGTTGATTCTTCCAAGAAGGCTATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCGAATAGACAATCTGCTGCACGATCCAAGGAGAGAAAAATACGTTACACTAATGAATTAGAGAAGAAGGTGCAAATGCTTCAATCAGAAGCGACTTCCCTTTCTGCTCAGGTCACTGTGTTACAGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGATTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACATTGAGGGAGGAAGTACAGCGACTTAAGATAGCCGCTGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATGGGAGGAGGGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATTTCTTCAATTTGGCAACTCCCAGAATCATCAACAGCCACAGCTGCTTCACATGTCTCAGCCTGATGCTCGAGGAGGGTCTCCACCGTCCCAGCTTCCAGGAGCTTAA 564 47.34 MDGSLTSSFEVDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLREEVQRLKIAAAQLPVANGNSFNMGGGLPPQFPPLQTSFLQFGNSQNHQQPQLLHMSQPDARGGSPPSQLPGA* 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4513114 4514362 + CsaV3_6G005320.1 Csa06g00532 532159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00532 187 Pfam bZIP transcription factor 32 88 IPR004827 GO:0003700|GO:0006355
Csa06g00532 187 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 1 172 - -
Csa06g00532 187 MobiDBLite consensus disorder prediction 156 187 - -
Csa06g00532 187 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 172 - -
Csa06g00532 187 SUPERFAMILY Leucine zipper domain 32 84 IPR046347 GO:0003700|GO:0006355
Csa06g00532 187 SMART brlzneu 28 92 IPR004827 GO:0003700|GO:0006355
Csa06g00532 187 MobiDBLite consensus disorder prediction 156 170 - -
Csa06g00532 187 Gene3D - 30 92 - -
Csa06g00532 187 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 30 93 IPR004827 GO:0003700|GO:0006355
Csa06g00532 187 Coils Coil 107 127 - -
Csa06g00532 187 CDD bZIP_plant_RF2 33 82 IPR044759 GO:0003700|GO:0006355
Csa06g00532 187 Coils Coil 55 75 - -
Csa06g00532 187 Coils Coil 83 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00532 Csa-Chr6:4513114 Csa07g00052 Csa-Chr7:584738 2.72E-51 dispersed
Csa03g01585 Csa-Chr3:11760363 Csa06g00532 Csa-Chr6:4513114 1.66E-53 transposed
Csa03g01596 Csa-Chr3:11855707 Csa06g00532 Csa-Chr6:4513114 2.27E-51 transposed
Csa05g00893 Csa-Chr5:6934222 Csa06g00532 Csa-Chr6:4513114 8.70E-59 transposed
Csa06g01114 Csa-Chr6:9232616 Csa06g00532 Csa-Chr6:4513114 3.74E-57 transposed
Csa07g01423 Csa-Chr7:14447945 Csa06g00532 Csa-Chr6:4513114 3.81E-70 transposed
Csa01g01658 Csa-Chr1:12380301 Csa06g00532 Csa-Chr6:4513114 3.19E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31928 PF00170 bZIP_1 1.10E-07 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00532 K20557 - csv:101215277 358.607