Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00534 ATGGCTGCAACTTCTGGTGCTGTGCTTACTGGATTGGGCTCACCCTTCCTCCGTGGAAGTAGCAGAACTCGGACCTTGCTGGCCGGAGCTAGAGGTAGTGTCAATGTTGTCAGCTCTAGCAAGCTTGTCATCGTCGCTGCTGCTCAGCCTAAGAAGTCTTGGCTCCCTGGTGTTAGAGGTGGTGGCAACTTGGTCGACCCAGAATGGCTTGATGGCTCACTTCCAGGTGACTACGGCTTCGACCCATTGGGTTTGGGGAAGGACCCTGCATTTTTGAAGTGGTATAGAGAAGCAGAGCTGATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCGTCGGACAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATTGCTCCATTCTCCTTCGGATCACTTCTAGGAACCCAGCTTCTGCTAATGGGATGGGTTGAAAGCAAACGATGGGTGGATTTCTTCAACCCAGAATCTCAATCGGTGGAATGGGCTACACCATGGTCGAGGACGGCAGAGAATTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTCTTAAAGATGGGGTTTACATTGCAGACACGGAGAAATTGGAGAGATTGAAGTTGGCAGAAATCAAGCATGCTAGGATCGCCATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAAACACCATTGGGTGCTCTTGGATTGTAA 768 51.56 MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4530953 4533334 - CsaV3_6G005340.1 Csa06g00534 532161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00534 255 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 255 IPR001344 GO:0009765|GO:0016020
Csa06g00534 255 Pfam Chlorophyll A-B binding protein 67 243 IPR022796 -
Csa06g00534 255 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 2 255 - -
Csa06g00534 255 Gene3D Chlorophyll a/b binding protein domain 67 254 - -
Csa06g00534 255 SUPERFAMILY Chlorophyll a-b binding protein 64 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00534 Csa-Chr6:4530953 Csa04g01602 Csa-Chr4:15434949 5.17E-30 dispersed
Csa01g01655 Csa-Chr1:12361847 Csa06g00534 Csa-Chr6:4530953 2.95E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00534 K08917 - csv:101204705 523.087