Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00537 ATGGGTGGCACCTGGAGGCACATAAGTACTAAGTCAGATGGCAATGATGATCACGTTTTTCTTGATAGTATTCTTTTAAGTGGTTCATCTAATGAAGCAGCCGATAGAAGGCTTCCATTGTCACACAAAAGAACTCGAGGAAATATAATTGACTTTGAGGCTTGTTCCAAGCTTGAGGGCTTAAATTTGGATGTTAGAAAAAACTCGAAGCCCATGGATAGGAGGCCTGGTAATATTGGACATGTTCTGATACACGAAGTGATATTTTCAACGGTTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTTTCTGATATAGGACTTAACATTCGAGAAGCACATGTATTTTCAACAACTGATGGTTACTCCTTGGATGTATTTGTGGTGGATGGATGGCCTATTGAGGAAACTGATGGCTTGTACGAAGCTATGGAAAAAGCAGTGGCTAGATATGAGGGATCGTGGTCTGGGTCTTCACATTCTCATCCAGTGGTCAAGAAGACATTAGACGCCCAGGTAAAATCAGCAGATTGGGAAATAGATAGACGGTTACTGAAGATAGGTGAAAGAATTGCATCAGGATCTTGTGGTGATTTGTACCATGGATTTTATCTTGGTCAAGATGTAGCTGTCAAGATATTAAGGTCTGAAGATCTAAATGCTGATTTAGAGGATGAGTTCAATCAAGAAGTGACTATTCTCAGGAAGGTCCAGCACAAAAATATAGTTCGTTTTGTAGGTGCTTGTACAAGCTCCCCACATTTGTGTATTGTAACAGAGTATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGCTGAAGCTCTTGCAACTGCTGAAGTTTTCTATTGATGTTTGTGAAGGAATGGAGTACTTACATTTAAATAACATTATTCATAGGGACTTGAAGACAGCAAATCTGCTAATGGACACTCAACAGGTTGTAAAGGTGGCAGATTTTGGAGTTGCACGATACCAGAGTCAAGGAGTAATGACAGCAGAAACTGGAACATACAGATGGATGGCTCCTGAGGTAATAAATCATCTGCCATATGATCAGAAAGCAGATATTTTCAGTTTTGCGATTGTGTTGTGGGAACTAGTAACAGCAAAGGTTCCTTATGATTCCATGACACCATTACAAGCTGCCCTTGGAGTAAGACAGGGACTACGTCCAGATCTTCCCAAAAATGTTCACCCTAAATTGTTGGATATGATGCAAAGATGTTGGGATGCAGAACCTGTAAATCGGCCTCCATTTACCGAGATAAAAGTTGAACTCAAAAGTCTCCTAGAAGAAGTAGAGATGTGTACAAAATATGAAGAAAATTGTGCAGCAGTTAATGGGAGCTAA 1374 40.39 MGGTWRHISTKSDGNDDHVFLDSILLSGSSNEAADRRLPLSHKRTRGNIIDFEACSKLEGLNLDVRKNSKPMDRRPGNIGHVLIHEVIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPIEETDGLYEAMEKAVARYEGSWSGSSHSHPVVKKTLDAQVKSADWEIDRRLLKIGERIASGSCGDLYHGFYLGQDVAVKILRSEDLNADLEDEFNQEVTILRKVQHKNIVRFVGACTSSPHLCIVTEYMPGGSLYDYLHKNHCVLKLLQLLKFSIDVCEGMEYLHLNNIIHRDLKTANLLMDTQQVVKVADFGVARYQSQGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELVTAKVPYDSMTPLQAALGVRQGLRPDLPKNVHPKLLDMMQRCWDAEPVNRPPFTEIKVELKSLLEEVEMCTKYEENCAAVNGS* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4558344 4573046 + CsaV3_6G005370.1 Csa06g00537 532164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00537 457 PRINTS Tyrosine kinase catalytic domain signature 261 274 IPR001245 GO:0004672|GO:0006468
Csa06g00537 457 PRINTS Tyrosine kinase catalytic domain signature 298 316 IPR001245 GO:0004672|GO:0006468
Csa06g00537 457 PRINTS Tyrosine kinase catalytic domain signature 343 353 IPR001245 GO:0004672|GO:0006468
Csa06g00537 457 PRINTS Tyrosine kinase catalytic domain signature 362 384 IPR001245 GO:0004672|GO:0006468
Csa06g00537 457 PRINTS Tyrosine kinase catalytic domain signature 405 427 IPR001245 GO:0004672|GO:0006468
Csa06g00537 457 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 30 445 - -
Csa06g00537 457 SMART serkin_6 187 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00537 457 ProSiteProfiles Protein kinase domain profile. 187 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00537 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 445 - -
Csa06g00537 457 ProSiteProfiles ACT domain profile. 86 160 IPR002912 -
Csa06g00537 457 SUPERFAMILY Protein kinase-like (PK-like) 169 438 IPR011009 -
Csa06g00537 457 SUPERFAMILY ACT-like 85 155 IPR045865 -
Csa06g00537 457 Pfam Protein tyrosine and serine/threonine kinase 187 433 IPR001245 GO:0004672|GO:0006468
Csa06g00537 457 Gene3D Phosphorylase Kinase; domain 1 174 264 - -
Csa06g00537 457 Gene3D Transferase(Phosphotransferase) domain 1 265 455 - -
Csa06g00537 457 CDD STKc_MAP3K-like 193 430 - -
Csa06g00537 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00537 Csa-Chr6:4558344 Csa07g00131 Csa-Chr7:1153965 2.14E-153 dispersed
Csa06g03220 Csa-Chr6:27257598 Csa06g00537 Csa-Chr6:4558344 9.70E-63 dispersed
Csa06g00537 Csa-Chr6:4558344 Csa06g03630 Csa-Chr6:29264801 8.24E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78325 PF07714 PK_Tyr_Ser-Thr 7.90E-71 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00537 - - csv:101216231 905.975