Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00543 ATGCAGCCCGATCAGAGAAGAAAGTCGTCCATAGATGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCGTATGACACTCATACTGGAGATAAAGTTGCAATTAAGAAAATCAATGATATCTTTGAGCACGTTTCTGATGCAACTCGTATTCTTCGTGAGATAAAACTTTTAAGGCTATTGAGACATCCAGACATCGTGGAGATAAAGCACATCCTACTACCTCCATCTAGAAGGGAATTCAAAGACATTTATGTCGTGTTTGAGCTCATGGAATCTGATCTACATCAAGTTATCAAAGCAAATGATGATTTGACTCCTGAACATTATCAGTTCTTTCTTTACCAGCTTCTTCGAGGCTTGAAATACATACACACAGCAAATGTCTTCCACCGGGACCTAAAACCAAAAAACATATTAGCAAATGCCGACTGCAAACTCAAGATCTGTGACTTTGGTCTAGCACGAGTTGCTTTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTAGCAACAAGGTGGTACAGAGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCAATTGATATATGGAGCATTGGCTGCATCTTTGCGGAGCTTTTAACTGGAAAACCACTTTTCCCTGGAAAGAATGTTGTCCACCAATTAGATTTGATGACGGACTTTTTGGGAACCCCAAATGCAGAAGCCATTGCCAGGGTACGAAACGAGAAAGCTCGAAGATACTTGAGCAGTATGCGAAAGAAGAAGCCTGTTCCTTTCTCCCAGAAATTCCCTCATGCAGATCCACTTGCACTTCGCTTGTTGGAAAGAATGTTGGCTTTTGAGCCAAAGGATCGACCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAGGTTGAGAGAGAGCCATCTGCTCAACCCGTTACTAAGATGGAATTTGAATTTGAAAGACGAAGGATAACTAAGGAAGATGTCCGGGAGCTTATTTACCGTGAGATTCTCGAGTACCATCCAAAAATGTTGAAGGAGTTCTTAGATGGATCAGAACCTACCGGTTTCATGTATCCAAGTGCGGTTGACCATTTTAAGAAGCAATTTGCGTTCCTTGAGGAACACTATGGAAATGGTGCACCTGTAGCTCCTCCTGAAAGACAACATGCATCCTTGCCTAGGCCATGTGTTTTATACTCAGATAACATGGTGCAGAACCCAGCCCAAGTTGCAAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCGCCAGTGGATAGGACTTGCAATATTCCTTTGGCTAGAGTTCCTATTCAAGTTCCTCAATCTATTCAAGGCAATGGTGCAAGGCCTGGAAAAGTTGTTGGCTCTGTGTTGCGATACAACTGTGGAGCAGCAGCAGCGGCAGTGGCACCTGAAGTTCTTGAACAGCGGAGAATGACCAGAAACCCTTCCATTCCTCCACAGTACGCCGGTAATAACTGTTCGTATACGAGGAGAAACTCATCCTGTAAAAATGAAAGAGCTGATGAAGAAGCCATTGAAGGTCCAAATGGGTTGCAGCCTAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAACTGGTACTGA 1698 43.11 MQPDQRRKSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGDKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLDGSEPTGFMYPSAVDHFKKQFAFLEEHYGNGAPVAPPERQHASLPRPCVLYSDNMVQNPAQVANDLSKCSIKEVERPPVDRTCNIPLARVPIQVPQSIQGNGARPGKVVGSVLRYNCGAAAAAVAPEVLEQRRMTRNPSIPPQYAGNNCSYTRRNSSCKNERADEEAIEGPNGLQPKPQYIARKVAAAQGGPGNNWY* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4664720 4674159 + CsaV3_6G005430.1 Csa06g00543 532170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00543 565 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 479 - -
Csa06g00543 565 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00543 565 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Csa06g00543 565 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00543 565 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Csa06g00543 565 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 479 - -
Csa06g00543 565 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Csa06g00543 565 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00543 565 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Csa06g00543 565 CDD STKc_TDY_MAPK 24 361 - -
Csa06g00543 565 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00426 Csa-Chr1:2662730 Csa06g00543 Csa-Chr6:4664720 0 dispersed
Csa01g00706 Csa-Chr1:4473313 Csa06g00543 Csa-Chr6:4664720 0 dispersed
Csa04g00797 Csa-Chr4:5580840 Csa06g00543 Csa-Chr6:4664720 0 dispersed
Csa05g00251 Csa-Chr5:1523550 Csa06g00543 Csa-Chr6:4664720 1.18E-115 dispersed
Csa05g01064 Csa-Chr5:10667094 Csa06g00543 Csa-Chr6:4664720 3.10E-10 dispersed
Csa06g00543 Csa-Chr6:4664720 Csa06g02422 Csa-Chr6:21605091 0 dispersed
Csa06g00543 Csa-Chr6:4664720 Csa06g01386 Csa-Chr6:11833552 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78326 PF00069 Pkinase 7.10E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00543 - K04371 csv:101216364 1145.95